View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11191_high_2 (Length: 615)

Name: NF11191_high_2
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11191_high_2
NF11191_high_2
[»] chr4 (3 HSPs)
chr4 (17-330)||(49541708-49542023)
chr4 (329-605)||(49541394-49541668)
chr4 (27-329)||(40917167-40917482)
[»] chr8 (2 HSPs)
chr8 (27-329)||(2883859-2884174)
chr8 (27-329)||(3150392-3150707)
[»] chr7 (3 HSPs)
chr7 (76-325)||(29251423-29251671)
chr7 (27-74)||(29251360-29251407)
chr7 (80-178)||(29254665-29254763)
[»] chr1 (2 HSPs)
chr1 (79-234)||(1086830-1086980)
chr1 (32-75)||(1086769-1086812)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 49542023 - 49541708
Alignment:
Q  17 aataatgacgccataggagatcttcgtgcagagttgacaaactctgatatgcctttggtgaaataaaaagttttccaactttctaatatctatatcatat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49542023 aataatgacgccataggagatcttcgtgcagagttgacaaactgtgatatgcctttggtgaaataaaaagttttccaactttctaatatctatatcatat 49541924  T
Q  117 gtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgacatcgatctgctgttaagaataaccagaaggatggtgccgca 216  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49541923 gtacaactccagtatttaggaggaggtaatttt-gggtgcgtttggtcccatcaacgacatcgatctgctgttaagaataaccagaaggatggtgccgca 49541825  T
Q  217 actcaaaagctgcacaatgacagtaaaaatatggatagaactgcagatggggttcccaaaata---tcatcctgtgttagcggtgagggtgatgatttaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||||||||    
T  49541824 actcaaaagctgcacaatgacagtaaaaatatggatagaactgcagatggagttcccaaaatattctcatcctgtgttagcagtgagggtgatgatttaa 49541725  T
Q  314 aatcattccaatctatg 330  Q
    |||||||||||||||||    
T  49541724 aatcattccaatctatg 49541708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 329 - 605
Target Start/End: Complemental strand, 49541668 - 49541394
Alignment:
Q  329 tgattatggctatcattttacaaaatagtcataatttttattgcctgctaggaatttctcatgaaataataacttcatattatcttaaatttaattnnnn 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  49541668 tgattatggctatcattttacaaaatagtcataatttttattgcctgctaggaatttctcatgaaataataacttcatattatcttaaatttaattaaaa 49541569  T
Q  429 nnngaaccaaacaacaactcatcagacattggggtatatcaatactttgtttggtaataacgtttctaatcgaacttatgttcagtgtccgacactaaca 528  Q
       |||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||    
T  49541568 aaagaaccaaacaacaactcatcagacattgtggtatttcagtactttgtttggtaataacgtttctaatcgaacgtgtgtccagtgtctgacactaaca 49541469  T
Q  529 tgacactcatatatgtaattaaattcaactataannnnnnnnnncttcaaattattaataatatcagcgtatctgtg 605  Q
    ||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  49541468 tgacactcatatatgtaattaaattcaactataa--ttttttttcttcaaattattaataatatcagcgtatctgtg 49541394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 27 - 329
Target Start/End: Complemental strand, 40917482 - 40917167
Alignment:
Q  27 ccataggagatcttcgtgcagagttgacaaactctgatatgcctttggt--------------gaaataaaaagttttccaactttctaatatctatatc 112  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||              ||||||||||||||||| |||||||||||||||||||    
T  40917482 ccataggagatcttcgtgcagagttgacaaagtgtgatgtgcctttggttaaacgcttctatggaaataaaaagttttccgactttctaatatctatatc 40917383  T
Q  113 atatgtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgacatcgatctgctgttaagaataaccagaaggatggtgc 212  Q
    ||||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||||||||    |||||||||||||||||||||||||||||||||    
T  40917382 atatgtagagctccagtatttaggaggagataatttttgggtgtgtttggtcccatcaacgac----atctgctgttaagaataaccagaaggatggtgc 40917287  T
Q  213 cgcaactcaaaagctgcacaatgacagtaaaaatatggatagaactgcagatggggttcccaaaata---tcatcctgtgttagcggtgagggtgatgat 309  Q
    | ||||||||||  ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||   ||||| ||||||||| | ||||||||||||    
T  40917286 cacaactcaaaaagtgcgcaatgacggtaaaaatatggatagaagtgcagatggggttcccaaaatatcctcatcgtgtgttagcagcgagggtgatgat 40917187  T
Q  310 ttaaaatcattccaatctat 329  Q
    ||||||||||||||||||||    
T  40917186 ttaaaatcattccaatctat 40917167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 27 - 329
Target Start/End: Original strand, 2883859 - 2884174
Alignment:
Q  27 ccataggagatcttcgtgcagagttgacaaactctgatatgcctttggt--------------gaaataaaaagttttccaactttctaatatctatatc 112  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||              |||||||||||||||||||||| ||||||||||| ||    
T  2883859 ccataggagatcttcgtgcagagttgacaaactgtgatatgcctttggttaaacgtttctatggaaataaaaagttttccaacttcctaatatctatgtc 2883958  T
Q  113 atatgtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgacatcgatctgctgttaagaataaccagaaggatggtgc 212  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||    |||||||||||||||||||||||| ||||||||    
T  2883959 atatgtacaactccagtatttaggaggagataatttttgggtttgtttggtcccatcaacgac----atctgctgttaagaataaccagaacgatggtgc 2884054  T
Q  213 cgcaactcaaaagctgcacaatgacagtaaaaatatggatagaactgcagatggggttcccaaaata---tcatcctgtgttagcggtgagggtgatgat 309  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||| |||||| |||||||||||||||   ||||| ||||||| | | ||||||||||||    
T  2884055 cgcaactcaaaagttgcccaatgacggtaaaaatatggatagaagtgcagacggggttcccaaaatatcctcatcgtgtgttaacagcgagggtgatgat 2884154  T
Q  310 ttaaaatcattccaatctat 329  Q
    ||||||||||||||||||||    
T  2884155 ttaaaatcattccaatctat 2884174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 27 - 329
Target Start/End: Complemental strand, 3150707 - 3150392
Alignment:
Q  27 ccataggagatcttcgtgcagagttgacaaactctgatatgcctttggt--------------gaaataaaaagttttccaactttctaatatctatatc 112  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||              |||||||||||||||||||||| ||||||||||| ||    
T  3150707 ccataggagatcttcgtgcagagttgacaaactgtgatatgcctttggttaaacgtttctatggaaataaaaagttttccaacttcctaatatctatgtc 3150608  T
Q  113 atatgtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgacatcgatctgctgttaagaataaccagaaggatggtgc 212  Q
    ||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||||||    |||||||||||||||||||||||| ||||||||    
T  3150607 atatgtacaactccagtatttaggaggaaataatttttgggtttgtttggtcccatcaacgac----atctgctgttaagaataaccagaacgatggtgc 3150512  T
Q  213 cgcaactcaaaagctgcacaatgacagtaaaaatatggatagaactgcagatggggttcccaaaata---tcatcctgtgttagcggtgagggtgatgat 309  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||| |||||| |||||||||||||||   ||||| ||||||| | ||||||||||||||    
T  3150511 cgcaactcaaaagttgcccaatgacggtaaaaatatggatagaagtgcagacggggttcccaaaatatcctcatcgtgtgttaacagtgagggtgatgat 3150412  T
Q  310 ttaaaatcattccaatctat 329  Q
    ||||||||||||||||||||    
T  3150411 ttaaaatcattccaatctat 3150392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 76 - 325
Target Start/End: Original strand, 29251423 - 29251671
Alignment:
Q  76 gaaataaaaagttttccaactttctaatatctatatcatatgtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgac 175  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||    
T  29251423 gaaataaaaagttttccgactttctagtatctatgtcatatgtacaactccaatatttaggaggaggtaatttttgggtgcgcttggtcccatcaactac 29251522  T
Q  176 atcgatctgctgttaagaataaccagaaggatggtgccgcaactcaaaagctgcacaatgacagtaaaaatatggatagaactgcagatggggttcccaa 275  Q
        |||||||||||||||||| ||||| ||| ||| |  ||||||||| || ||  ||||  |||||||||||||||||| |||||||||||||||||     
T  29251523 ----atctgctgttaagaataagcagaaagattgtgtcctaactcaaaatctacatgatgagggtaaaaatatggatagaagtgcagatggggttcccag 29251618  T
Q  276 aata---tcatcctgtgttagcggtgagggtgatgatttaaaatcattccaat 325  Q
    ||||   ||||| ||||||||| | |||||||||||| |||||||||| ||||    
T  29251619 aatatcctcatcgtgtgttagctgcgagggtgatgatctaaaatcatttcaat 29251671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 29251360 - 29251407
Alignment:
Q  27 ccataggagatcttcgtgcagagttgacaaactctgatatgcctttgg 74  Q
    |||| |||||||||||||||||||||||||| | |||| |||||||||    
T  29251360 ccatcggagatcttcgtgcagagttgacaaagtgtgatctgcctttgg 29251407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 29254665 - 29254763
Alignment:
Q  80 taaaaagttttccaactttctaatatctatatcatatgtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgacatc 178  Q
    ||||||| |||||||| |||||  ||||||| || |||||||||||  |||| ||||||  | ||||||||| || |||||| | |||||||| |||||    
T  29254665 taaaaagctttccaacattctagcatctataccagatgtacaactcttgtatataggagatgataatttttgtgtacgtttgatgccatcaacaacatc 29254763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 1086830 - 1086980
Alignment:
Q  79 ataaaaagttttccaactttctaatatctatatcatatgtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgacatc 178  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||| |||| | ||||||||| |||||||||||| ||||||       
T  1086830 ataaaaagttttccaactttctagtatctataccacatgtacaactcgagtatttaggagaaggtga-ttttgggtgtgtttggtcccattaacgac--- 1086925  T
Q  179 gatctgctgttaagaataaccagaaggatggtgccgcaactcaaaagctgcacaat 234  Q
     ||||| |||||||||||| ||||| |||||||||  |||||||||||| ||||||    
T  1086926 -atctgttgttaagaataagcagaatgatggtgccataactcaaaagctacacaat 1086980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 1086769 - 1086812
Alignment:
Q  32 ggagatcttcgtgcagagttgacaaactctgatatgcctttggt 75  Q
    |||||||||||||||||||||||||| | |||| ||||||||||    
T  1086769 ggagatcttcgtgcagagttgacaaagtgtgatctgcctttggt 1086812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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