View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11191_high_3 (Length: 607)
Name: NF11191_high_3
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11191_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 19 - 597
Target Start/End: Complemental strand, 26952904 - 26952326
Alignment:
| Q |
19 |
gtaatttatcttctaattttataaacatcaatttaattgaagattgtaagtgatgttttataagttcaagaaattatactacattttgtagagggatgga |
118 |
Q |
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| T |
26952904 |
gtaatttatcttctaattttataaa-atcaatttaattgaagattgtaagtaatgttttataagttcaagaaattatactacattttgtagagggatgga |
26952806 |
T |
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| Q |
119 |
agtaggtttcattttctgttcttgtaacagtaaataaagattataccatgacaacattttttaaccaaggaatacaggcttgattgaaaataaaattctg |
218 |
Q |
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| T |
26952805 |
agtaggtttcattttctgttcttgtaacagtaaataaagattataccatgacaacattttttaaccaaggaatacaggcttgattgaaaataaaattatg |
26952706 |
T |
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| Q |
219 |
cttttatctcgttattatttatataccttgaacatgatcaagattcaagagaaggaatcatctggttgatttagttatgatgagtttttctttttggtgt |
318 |
Q |
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| T |
26952705 |
cttttgtctcgttattatttatataccttgaacatgatcaagattcaagagaaggaatcatctggttgatttagttatgatgagtttttctttttggtgt |
26952606 |
T |
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| Q |
319 |
tagattcgagccctgtcgtggcctgctttgctcgttggatgggttgctcagagtgcaaggtgcaaatatgctatttatttcacatatgtgattttctgaa |
418 |
Q |
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| T |
26952605 |
tagattcgagccttgtcgtggcctgctttactcgttggatgggttgctcagagtgcaaggtgcaaatatgctatttatttcacatatgtgattttctgaa |
26952506 |
T |
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| Q |
419 |
gtgagtggttgttaatttttatgtcaaatatgaggtggtgcccttaatattctattttgtgttgctgttaatatcaattatgatgaaatagggttcagtt |
518 |
Q |
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| T |
26952505 |
gtgagtggttgttaatttttatgtcaaatatgaggtagtgcccttaatattctattttgtgttgctgttaatatcaattatgatgaaatagggttcagtt |
26952406 |
T |
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| Q |
519 |
tggtgaaag-ttgtcttagttttggataaagaactctagactaaaactttgcacatggttacatttctcggtctcctttg |
597 |
Q |
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| T |
26952405 |
cggtgaaagtttgtcttagttttggataaagaactctagactaaaactttgcacatggttacatttctcggtctcctttg |
26952326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 309 - 446
Target Start/End: Complemental strand, 26944846 - 26944709
Alignment:
| Q |
309 |
tttttggtgttagattcgagccctgtcgtggcctgctttgctcgttggatgggttgctcagagtgcaaggtgcaaatatgctatttatttcacatatgtg |
408 |
Q |
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| T |
26944846 |
tttttgttgttagattcgaggattggcgtggcctgctttacttgttggatgggtcgcacagagtgcaaggtgcaaatttactatttattactaatatgtg |
26944747 |
T |
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| Q |
409 |
attttctgaagtgagtggttgttaatttttatgtcaaa |
446 |
Q |
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| T |
26944746 |
attctctgatgtaagaggttgaaagtttttatgtcaaa |
26944709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 394
Target Start/End: Original strand, 26977793 - 26977877
Alignment:
| Q |
310 |
ttttggtgttagattcgagccctgtcgtggcctgctttgctcgttggatgggttgctcagagtgcaaggtgcaaatatgctattt |
394 |
Q |
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| T |
26977793 |
ttttggtgttagattcgaggattggcatggccttctttacttgttggattggttgctcagagtgcaaggtgcaaatatactattt |
26977877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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