View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11191_high_9 (Length: 309)
Name: NF11191_high_9
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11191_high_9 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 44315007 - 44314716
Alignment:
| Q |
19 |
atgaaactaacacatgatattaaattaaattatttatattttcttaatttattatcaatgtcaatgcgtcaatggtgttcaatgtcagtgcttcatagct |
118 |
Q |
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| T |
44315007 |
atgaaactaacaaatgatattaaattaaattatttatattttcttaacttattatcaatgtcaatgcgtcaatggtgttcaatgtcagtgcttcatagct |
44314908 |
T |
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| Q |
119 |
cgataatactagaaagtacgaggataagtatt-atcagactcctttaaagctattatcgcaatgcaatagcatgataattgggatctgaatgaacacata |
217 |
Q |
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| T |
44314907 |
cgataatactagaaagtaccagtataagtatttatcagactcctttaaagctattatcgcaatgcaatagcatgataattgggatctgaatgaacacata |
44314808 |
T |
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| Q |
218 |
cctttttatagctccataaccatgactacctacgaccaaaatcgaagcatggtgcttctccacagcatcacagagaacatttctagcatctc |
309 |
Q |
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| T |
44314807 |
cctttttatagctccgtaaccatgactacctacaaccaaaatagaagcatggtgcttgtccacagcatcacagagaacatttctagcatctc |
44314716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 20233101 - 20232809
Alignment:
| Q |
19 |
atgaaactaacacatgatattaaattaaatta-tttatattttcttaatttattatcaatgtcaatgcgtcaatggtgttcaatgtcagtgcttcatagc |
117 |
Q |
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| T |
20233101 |
atgaaactaacaaatgatattaaattaaattaatttatattttcttaacttattatcaatgtcaatgcgtcaatggtgttcaatgtcagtgcttcatagc |
20233002 |
T |
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| Q |
118 |
tcgataatactagaaagtacgaggataagtatt-atcagactcctttaaagctattatcgcaatgcaatagcatgataattgggatctgaatgaacacat |
216 |
Q |
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| T |
20233001 |
tcgataatactagaaagtaccagtataagtatttatcagactcctttaaagctattatcgcaatgcaatagcatgataattgggatctgaatgaacacat |
20232902 |
T |
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| Q |
217 |
acctttttatagctccataaccatgactacctacgaccaaaatcgaagcatggtgcttctccacagcatcacagagaacatttctagcatctc |
309 |
Q |
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| T |
20232901 |
acctttttatagctccgtaaccatgactacctacaaccaaaatagaagcatggtgcttgtccacagcatcacagagaacatttctagcatctc |
20232809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 39637451 - 39637544
Alignment:
| Q |
214 |
catacctttttatagctccataaccatgactacctacgaccaaaatcgaagcatggtgcttctccacagcatcacagagaacatttctagcatc |
307 |
Q |
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| T |
39637451 |
catacctttttatagccccataaccgtgactacccacaaccaagattgaagcacggtacttttccactgtatcacagagaacatttctagcatc |
39637544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 39646119 - 39646212
Alignment:
| Q |
214 |
catacctttttatagctccataaccatgactacctacgaccaaaatcgaagcatggtgcttctccacagcatcacagagaacatttctagcatc |
307 |
Q |
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| T |
39646119 |
catacctttttatagccccataaccgtgactacccacaaccaagattgaagcacggtacttttccactgtatcacagagaacatttctagcatc |
39646212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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