View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11191_low_12 (Length: 265)

Name: NF11191_low_12
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11191_low_12
NF11191_low_12
[»] chr6 (1 HSPs)
chr6 (18-259)||(15926602-15926843)
[»] chr1 (11 HSPs)
chr1 (18-245)||(9320365-9320592)
chr1 (18-245)||(9350682-9350909)
chr1 (18-246)||(9317709-9317937)
chr1 (18-245)||(9254448-9254675)
chr1 (60-200)||(8942528-8942668)
chr1 (18-206)||(8964975-8965163)
chr1 (18-188)||(9104468-9104638)
chr1 (64-245)||(8932616-8932797)
chr1 (58-188)||(8873545-8873675)
chr1 (18-197)||(8921159-8921344)
chr1 (18-200)||(8956486-8956674)
[»] chr3 (1 HSPs)
chr3 (19-240)||(9160056-9160277)
[»] chr8 (1 HSPs)
chr8 (106-143)||(28294750-28294787)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 15926843 - 15926602
Alignment:
Q  18 ggttgctacttcattaataaaatcttgtccattgctcttagatttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaaca 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15926843 ggttgccacttcattaataaaatcttgtccattgctcttagatttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaaca 15926744  T
Q  118 gcaccaaaaccaccttcacccaacttgtctctgaaacctctagtcctcttttttatttctttgtatgaataccttattggcatcaaggtacttccacgaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15926743 gcaccaaaaccaccttcacccaacttgtctctgaaacctctagtcatcttttttatttctttgtatgaataccttattggcatcaaggtacttccacgaa 15926644  T
Q  218 gaaaaacttcaatattttcgtaaattgagttatctctgcttc 259  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  15926643 gaaaaacttcaatattttcgtaaattgagttatgtctgcttc 15926602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 9320365 - 9320592
Alignment:
Q  18 ggttgctacttcattaataaaatcttgtccattgctcttagatttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaaca 117  Q
    |||||| |||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9320365 ggttgcgacttcactaatgaaatcttgtccattacccttagatttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaaca 9320464  T
Q  118 gcaccaaaaccaccttcacccaacttgtctctgaaacctctagtcctcttttttatttctttgtatgaataccttattggcatcaaggtacttccacgaa 217  Q
    || ||||| || |||||||||||||||||| | |||| || |||| |||| ||||||||||||||||||||||| ||||||||||| ||||| ||  |||    
T  9320465 gctccaaagcctccttcacccaacttgtctttaaaacttcgagtcatcttctttatttctttgtatgaatacctaattggcatcaaagtactcccttgaa 9320564  T
Q  218 gaaaaacttcaatattttcgtaaattga 245  Q
    ||||||||||||||| ||| || |||||    
T  9320565 gaaaaacttcaatatcttcatacattga 9320592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 9350682 - 9350909
Alignment:
Q  18 ggttgctacttcattaataaaatcttgtccattgctcttagatttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaaca 117  Q
    |||||| |||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9350682 ggttgcgacttcactaatgaaatcttgtccattacccttagatttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaaca 9350781  T
Q  118 gcaccaaaaccaccttcacccaacttgtctctgaaacctctagtcctcttttttatttctttgtatgaataccttattggcatcaaggtacttccacgaa 217  Q
    |  ||||| || |||||||||||||||||||| |||| || |||| |||| ||||||||||||||||||||||| ||||||||||| ||||| ||  |||    
T  9350782 gttccaaagcctccttcacccaacttgtctctaaaacttcgagtcatcttctttatttctttgtatgaatacctaattggcatcaaagtactcccttgaa 9350881  T
Q  218 gaaaaacttcaatattttcgtaaattga 245  Q
    ||||||||||||||| ||| || |||||    
T  9350882 gaaaaacttcaatatcttcatatattga 9350909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 9317937 - 9317709
Alignment:
Q  18 ggttgctacttcattaataaaatcttgtccattgctcttagatttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaaca 117  Q
    |||||| |||||||||||||| ||||| ||||| | |||||| ||||||||||||||||||||||||||||| || ||   ||  |||||||||||||||    
T  9317937 ggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaatttcctttataaaca 9317838  T
Q  118 gcaccaaaaccaccttcacccaacttgtctctgaaacctctagtcctcttttttatttctttgtatgaataccttattggcatcaaggtacttccacgaa 217  Q
      ||| || || |||||||| |||||| |  | |||| ||||||| |||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  9317837 caaccgaaccctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaatacctgattggcatcatggtacttccacgaa 9317738  T
Q  218 gaaaaacttcaatattttcgtaaattgag 246  Q
    |||||||||||||||||||||||||||||    
T  9317737 gaaaaacttcaatattttcgtaaattgag 9317709  T

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Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 9254675 - 9254448
Alignment:
Q  18 ggttgctacttcattaataaaatcttgtccattgctcttagatttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaaca 117  Q
    |||||| |||||| |||| ||||| |||||||| | |||||||||| |||||||||||||||| ||||||||||| |||| ||||||||||||| ||||     
T  9254675 ggttgcgacttcactaatgaaatcatgtccattacccttagatttaaccaacatctttatggcaacaaatggcccactgcgtagctttcctttaaaaacg 9254576  T
Q  118 gcaccaaaaccaccttcacccaacttgtctctgaaacctctagtcctcttttttatttctttgtatgaataccttattggcatcaaggtacttccacgaa 217  Q
    || ||||| || |||||||||||||||||||| |||  || |||| |||| |||||||||||||| |||||||| ||||| ||||  ||||| ||  |||    
T  9254575 gctccaaagcctccttcacccaacttgtctctaaaatttcgagtcatcttctttatttctttgtaagaatacctaattggaatcagagtactcccttgaa 9254476  T
Q  218 gaaaaacttcaatattttcgtaaattga 245  Q
    ||||||||||||||| ||| || |||||    
T  9254475 gaaaaacttcaatatcttcatacattga 9254448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 200
Target Start/End: Original strand, 8942528 - 8942668
Alignment:
Q  60 tttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaacagcaccaaaaccaccttcacccaacttgtctctgaaacctcta 159  Q
    ||||||||||||||||||||| ||  ||||||| |||| ||||||||| ||||||||   |||| | || |||||||||||||||||  | |||||  ||    
T  8942528 tttacccaacatctttatggctaccgatggcccactgcgtagctttcccttataaaccttaccatagcctccttcacccaacttgtccttaaaaccatta 8942627  T
Q  160 gtcctcttttttatttctttgtatgaataccttattggcat 200  Q
    ||| | || ||||| ||| ||||||||||||| ||||||||    
T  8942628 gtcattttctttatctctgtgtatgaatacctaattggcat 8942668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 8964975 - 8965163
Alignment:
Q  18 ggttgctacttcattaataaaatcttgtccattgctcttagatttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaaca 117  Q
    ||||||||||||||||||||| || || ||||| |  || |||||||| |||||||| || |||||| | || || |||| ||| || |||||| | |||    
T  8964975 ggttgctacttcattaataaagtcctgcccattaccttttgatttacctaacatcttgattgccacacaaggtccactgcgtaggttccctttaaacaca 8965074  T
Q  118 gcaccaaaaccaccttcacccaacttgtctctgaaacctctagtcctcttttttatttctttgtatgaataccttattggcatcaaggt 206  Q
    |  ||||| || |||||||| || |||||| |||||||||||| | | ||||| ||||| ||||||||||| || || || ||||||||    
T  8965075 gtgccaaagcctccttcacctaatttgtctttgaaacctctagccatttttttaatttcattgtatgaatatctgatgggaatcaaggt 8965163  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 9104638 - 9104468
Alignment:
Q  18 ggttgctacttcattaataaaatcttgtccattgctcttagatttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaaca 117  Q
    ||||||||||||| ||||||| ||||||||||| |  || || |||||||||||||| || ||||||   ||||| || | ||| ||||| ||  | |||    
T  9104638 ggttgctacttcactaataaagtcttgtccattacctttcgacttacccaacatcttgattgccacaccgggcccactacgtaggtttcccttgaacaca 9104539  T
Q  118 gcaccaaaaccaccttcacccaacttgtctctgaaacctctagtcctcttttttatttctttgtatgaata 188  Q
    |  ||||| || |||||||| || |||||| |||||||||||| | | || || |||||||||||||||||    
T  9104538 gtgccaaagcctccttcacctaatttgtctttgaaacctctagccattttcttaatttctttgtatgaata 9104468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 245
Target Start/End: Original strand, 8932616 - 8932797
Alignment:
Q  64 cccaacatctttatggccacaaatggcccgctgcatagctttcctttataaacagcaccaaaaccaccttcacccaacttgtctctgaaacctctagtcc 163  Q
    ||||||||||||||||| || || ||||| || |  |||||||| ||||||||   |||| | || |||||||||||||| ||  | || | |||||||     
T  8932616 cccaacatctttatggctaccaaaggcccactacgaagctttcccttataaaccttaccatatcctccttcacccaacttttccttaaagcttctagtca 8932715  T
Q  164 tcttttttatttctttgtatgaataccttattggcatcaaggtacttccacgaagaaaaacttcaatattttcgtaaattga 245  Q
    ||| |||||| ||||||||||||||||| |||||||| | || | ||||  |||||||| |||| || ||||| || |||||    
T  8932716 tctgttttatctctttgtatgaatacctaattggcatgagggaatttccttgaagaaaatcttcgatgttttcatacattga 8932797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 8873675 - 8873545
Alignment:
Q  58 gatttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaacagcaccaaaaccaccttcacccaacttgtctctgaaacctc 157  Q
    ||||||||||||||||| || |||||| | || ||||| | ||| ||||| ||| | ||||  ||||| || |||||||| || |||||| |||||||||    
T  8873675 gatttacccaacatcttgattgccacacaaggaccgctacgtagttttcccttaaacacagtgccaaagcctccttcacctaatttgtctttgaaacctc 8873576  T
Q  158 tagtcctcttttttatttctttgtatgaata 188  Q
    ||| | | || || |||||||||||||||||    
T  8873575 tagccattttcttaatttctttgtatgaata 8873545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 8921159 - 8921344
Alignment:
Q  18 ggttgctacttcattaataaaatcttgtccattgct------cttagatttacccaacatctttatggccacaaatggcccgctgcatagctttccttta 111  Q
    |||||| ||||||||||| |||||||| ||||| ||      ||||  |||||||||||  |||||||| || || ||||| || |  |||| ||| |||    
T  8921159 ggttgcaacttcattaatgaaatcttgcccatttctatttgccttaagtttacccaacacttttatggctaccaaaggcccactacgaagctctccctta 8921258  T
Q  112 taaacagcaccaaaaccaccttcacccaacttgtctctgaaacctctagtcctcttttttatttctttgtatgaataccttattgg 197  Q
    |||||   |||| | || |||||||||||||| ||  | || ||||| ||| |||| ||||| ||||||||||||||||| |||||    
T  8921259 taaaccttaccatatcctccttcacccaacttttcgttaaagcctctcgtcatcttctttatctctttgtatgaatacctaattgg 8921344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 8956486 - 8956674
Alignment:
Q  18 ggttgctacttcattaataaaatcttgtccattgct------cttagatttacccaacatctttatggccacaaatggcccgctgcatagctttccttta 111  Q
    |||||| ||||||||||| |||||||||||||  ||      ||||  |||||||||||  |||||||| || || ||||| || |  ||||| || |||    
T  8956486 ggttgcaacttcattaatgaaatcttgtccatgtctatctcccttaagtttacccaacacttttatggctaccaaaggcccactacgaagcttcccctta 8956585  T
Q  112 taaacagcaccaaaaccaccttcacccaacttgtctctgaaacctctagtcctcttttttatttctttgtatgaataccttattggcat 200  Q
    |||||   |||| | || |||||||||||||| ||  | || ||||| ||| |||  ||||| ||||||||||||||||| ||||||||    
T  8956586 taaaccttaccatatcctccttcacccaacttttccttaaagcctctcgtcatctgctttatctctttgtatgaatacctaattggcat 8956674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 9160056 - 9160277
Alignment:
Q  19 gttgctacttcattaataaaatcttgtccattgctcttagatttacccaacatctttatggccacaaatggcccgctgcatagctttcctttataaacag 118  Q
    ||||| || ||| |||| |||||||||||||| | |||||| |||||||||||||||||||| |||||||  || || | || |||||||||||||||||    
T  9160056 gttgcaacctcactaatgaaatcttgtccattacccttagacttacccaacatctttatggcaacaaatgcaccacttcttaactttcctttataaacag 9160155  T
Q  119 caccaaaaccaccttcacccaacttgtctctgaaacctctagtcctcttttttatttctttgtatgaataccttattggcatcaaggtacttccacgaag 218  Q
     |||||| || |||||||||||||||||  | |||| | ||||| |||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  9160156 aaccaaaccctccttcacccaacttgtccttaaaacttttagtcatcttctttatatctttgtatgaatacctgattggcatcaaggtacttccacgaag 9160255  T
Q  219 aaaaacttcaatattttcgtaa 240  Q
    ||||||||||||||||||||||    
T  9160256 aaaaacttcaatattttcgtaa 9160277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 28294750 - 28294787
Alignment:
Q  106 cctttataaacagcaccaaaaccaccttcacccaactt 143  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  28294750 cctttataaacagctccaaaaccaccttgacccaactt 28294787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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