View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11191_low_13 (Length: 262)
Name: NF11191_low_13
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11191_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 42393690 - 42393444
Alignment:
| Q |
1 |
gttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttcaagaggaattagaagcagtggttgggaaagataacttagtagaag |
100 |
Q |
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| T |
42393690 |
gttgaatttgcaatggcagaaatgatgaacaaaccaggagtaatgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaag |
42393591 |
T |
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| Q |
101 |
agtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42393590 |
agtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgtctcattgcccaagtga |
42393491 |
T |
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| Q |
201 |
aaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgt |
247 |
Q |
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| T |
42393490 |
aaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgt |
42393444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 42387485 - 42387243
Alignment:
| Q |
2 |
ttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttcaagaggaattagaagcagtggttgggaaagataacttagtagaaga |
101 |
Q |
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||||||||| ||| ||| |||| ||| |||| |||| ||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
42387485 |
ttgagtttgtaatagcataaatgatggacaa-ccagaagtaatgaggaaggttcaagaggaactggaaatcgtggttgggaaagataacttagtagaaga |
42387387 |
T |
|
| Q |
102 |
gtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaa |
201 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | ||||| |||||||||||| |
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| T |
42387386 |
gtctcatattcaaaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccaacacttccacttttagtccctcactgcccaagtgaa |
42387287 |
T |
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| Q |
202 |
accaccaacgtaggaggctacacaattccaaaggggtcttgtgt |
245 |
Q |
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| T |
42387286 |
accaccaacattggaggctacacaattccagagggatctcgtgt |
42387243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 42377137 - 42376894
Alignment:
| Q |
2 |
ttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttcaagaggaattagaagcagtggttgggaaagataacttagtagaaga |
101 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||| | |||||||| |||||||||||||||||||| |
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| T |
42377137 |
ttgagtttgtaatggcagaaatgatgaacaaaccagaagtgatgaggaaggttcaagaggagttagaaactgtggttggaaaagataacttagtagaaga |
42377038 |
T |
|
| Q |
102 |
gtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaa |
201 |
Q |
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||||||||||||||||||| ||||||| || ||||| ||||||||||| |||||||| ||||| ||||||||||| || | ||||| |||||||||||| |
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| T |
42377037 |
gtctcatattcacaagctaacctacttacatgcagtgatgaaagaaactcttcgtttacaccctgcacttccacttttagtccctcactgcccaagtgaa |
42376938 |
T |
|
| Q |
202 |
accaccaacgtaggaggctacacaattccaaaggggtcttgtgt |
245 |
Q |
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||||||||| | |||||||||||||||||| |||| ||| |||| |
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| T |
42376937 |
accaccaacattggaggctacacaattccagagggatctcgtgt |
42376894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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