View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11191_low_17 (Length: 240)

Name: NF11191_low_17
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11191_low_17
NF11191_low_17
[»] chr2 (7 HSPs)
chr2 (48-213)||(45248752-45248917)
chr2 (1-50)||(7327762-7327813)
chr2 (1-50)||(8214571-8214622)
chr2 (1-50)||(8898293-8898344)
chr2 (1-45)||(30728935-30728979)
chr2 (1-46)||(32845674-32845721)
chr2 (1-46)||(36944242-36944289)
[»] chr7 (7 HSPs)
chr7 (1-47)||(18656290-18656337)
chr7 (1-49)||(43596524-43596574)
chr7 (1-50)||(1263956-1264008)
chr7 (1-46)||(35097776-35097822)
chr7 (1-45)||(3548762-3548809)
chr7 (1-48)||(15108336-15108386)
chr7 (1-46)||(45639736-45639783)
[»] chr5 (6 HSPs)
chr5 (1-47)||(34889713-34889759)
chr5 (1-46)||(31261227-31261272)
chr5 (1-45)||(18254380-18254426)
chr5 (1-44)||(1497329-1497374)
chr5 (1-44)||(24801778-24801822)
chr5 (1-46)||(28593536-28593583)
[»] chr3 (12 HSPs)
chr3 (1-50)||(23388719-23388768)
chr3 (1-45)||(52491572-52491618)
chr3 (1-45)||(53667679-53667725)
chr3 (1-45)||(54012357-54012403)
chr3 (1-45)||(13003908-13003955)
chr3 (1-47)||(21549993-21550041)
chr3 (1-46)||(1421550-1421597)
chr3 (1-46)||(3820492-3820539)
chr3 (1-46)||(31341453-31341500)
chr3 (1-50)||(53523386-53523437)
chr3 (1-46)||(54087742-54087789)
chr3 (1-50)||(55090255-55090306)
[»] chr4 (10 HSPs)
chr4 (1-48)||(12144792-12144840)
chr4 (1-45)||(23981121-23981167)
chr4 (1-44)||(8590645-8590690)
chr4 (1-45)||(9884954-9884999)
chr4 (1-46)||(3475484-3475531)
chr4 (1-46)||(12878673-12878720)
chr4 (1-46)||(13033138-13033185)
chr4 (1-46)||(15782260-15782307)
chr4 (1-46)||(28292051-28292098)
chr4 (1-44)||(48613061-48613105)
[»] chr6 (3 HSPs)
chr6 (1-45)||(1309785-1309831)
chr6 (1-46)||(24602428-24602475)
chr6 (1-48)||(31826418-31826468)
[»] chr8 (9 HSPs)
chr8 (1-43)||(43585368-43585410)
chr8 (1-50)||(3448884-3448935)
chr8 (1-46)||(11961115-11961162)
chr8 (1-46)||(22686741-22686788)
chr8 (1-46)||(23564100-23564147)
chr8 (1-44)||(23566138-23566182)
chr8 (1-52)||(31343356-31343410)
chr8 (1-46)||(38132073-38132120)
chr8 (1-46)||(38687523-38687570)
[»] chr1 (6 HSPs)
chr1 (1-45)||(15710807-15710852)
chr1 (1-46)||(28943653-28943698)
chr1 (1-50)||(10176431-10176482)
chr1 (1-46)||(16555541-16555588)
chr1 (1-46)||(37847600-37847647)
chr1 (1-50)||(46583820-46583871)
[»] scaffold0334 (1 HSPs)
scaffold0334 (1-44)||(4313-4357)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 48 - 213
Target Start/End: Complemental strand, 45248917 - 45248752
Alignment:
Q  48 attctgaatcaaatatagagacaagttctgataaaacaaattaatatgacttgataccaagaaagcaccaagatttgtattcaaagaaagaacaaaccaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45248917 attctgaatcaaatatagagacaagttctgataaaacaaattaatatgacttgataccaagaaagcaccaagatttgtattcaaagaaagaacgaaccaa 45248818  T
Q  148 gattttctcaacaacaaaagaagtaaccattcttcatacaacccaactcaactcaaacaaacaaca 213  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45248817 gattttctcaacaacaaaagaagtaaccattcttcaaacaacccaactcaactcaaacaaacaaca 45248752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7327813 - 7327762
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctatatt 50  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||| ||||    
T  7327813 aaacaaaaaatgacctatattacagggggtaaagcaccattaaccctttatt 7327762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8214571 - 8214622
Alignment:
Q  1 aaacaaaaaatgacctatattacatgg--taaatcaccattaaccctatatt 50  Q
    |||| ||||||||||||||||||| ||  |||| ||||||||||||||||||    
T  8214571 aaaccaaaaatgacctatattacagggggtaaagcaccattaaccctatatt 8214622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8898344 - 8898293
Alignment:
Q  1 aaacaaaaaatgacctatattacat--ggtaaatcaccattaaccctatatt 50  Q
    |||| |||||||||||||||||||   |||||| ||||||||||||||||||    
T  8898344 aaaccaaaaatgacctatattacagagggtaaagcaccattaaccctatatt 8898293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30728935 - 30728979
Alignment:
Q  1 aaacaaaaaatgacctatattacatggtaaatcaccattaaccct 45  Q
    |||| ||||||||| ||||||||| |||||| |||||||||||||    
T  30728935 aaaccaaaaatgacttatattacagggtaaagcaccattaaccct 30728979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32845674 - 32845721
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  32845674 aaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 32845721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36944242 - 36944289
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  36944242 aaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 36944289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18656290 - 18656337
Alignment:
Q  1 aaacaaaaaatgacctatattacatgg-taaatcaccattaaccctat 47  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
T  18656290 aaacaaaaaatgacctatattacagggataaatcaccattaaccctat 18656337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43596524 - 43596574
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctatat 49  Q
    ||||||||||||||||||||||||   |||||| |||||||||||||||||    
T  43596524 aaacaaaaaatgacctatattacagggggtaaagcaccattaaccctatat 43596574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1263956 - 1264008
Alignment:
Q  1 aaacaaaaaatgacctatattaca---tggtaaatcaccattaaccctatatt 50  Q
    ||||||||||||||||||||||||    |||||| ||||||||||||||||||    
T  1263956 aaacaaaaaatgacctatattacaagggggtaaaacaccattaaccctatatt 1264008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35097776 - 35097822
Alignment:
Q  1 aaacaaaaaatgacctatattaca-tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||    
T  35097776 aaacaaaaaatgacctatattacaggggtaaaacaccattaacccta 35097822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3548809 - 3548762
Alignment:
Q  1 aaacaaaaaatgacctatattaca---tggtaaatcaccattaaccct 45  Q
    ||||||||||||||||||||||||   ||||||| |||||||||||||    
T  3548809 aaacaaaaaatgacctatattacatggtggtaaagcaccattaaccct 3548762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15108336 - 15108386
Alignment:
Q  1 aaacaaaaaatgacctatattac---atggtaaatcaccattaaccctata 48  Q
    |||||||||||||||||||||||   | |||||| ||||||||||||||||    
T  15108336 aaacaaaaaatgacctatattacaggagggtaaagcaccattaaccctata 15108386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45639736 - 45639783
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  45639736 aaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 45639783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34889713 - 34889759
Alignment:
Q  1 aaacaaaaaatgacctatattacatggtaaatcaccattaaccctat 47  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||    
T  34889713 aaacaaaaaataacctatattacagggtaaagcaccattaaccctat 34889759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31261227 - 31261272
Alignment:
Q  1 aaacaaaaaatgacctatattacatggtaaatcaccattaacccta 46  Q
    |||||||||||||||||||||||| | |||| ||||||||||||||    
T  31261227 aaacaaaaaatgacctatattacaggataaagcaccattaacccta 31261272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18254380 - 18254426
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 45  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||    
T  18254380 aaacaaaaaatgacctatattacagggggtaaatcaccattaaccct 18254426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1497374 - 1497329
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 44  Q
    ||||||||||||||||||||||||   |||||||||||||||||||    
T  1497374 aaacaaaaaatgacctatattacagggggtaaatcaccattaaccc 1497329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24801822 - 24801778
Alignment:
Q  1 aaacaaaaaatgacctatattacatgg-taaatcaccattaaccc 44  Q
    |||||||||||||||||||||||| || |||| ||||||||||||    
T  24801822 aaacaaaaaatgacctatattacaaggataaagcaccattaaccc 24801778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28593536 - 28593583
Alignment:
Q  1 aaacaaaaaatgacctatattacatgg--taaatcaccattaacccta 46  Q
    |||||||||||||||||||||||| ||  |||| ||||||||||||||    
T  28593536 aaacaaaaaatgacctatattacaggggttaaagcaccattaacccta 28593583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 23388768 - 23388719
Alignment:
Q  1 aaacaaaaaatgacctatattacatggtaaatcaccattaaccctatatt 50  Q
    |||||||||||||||||||||||| | |||| ||||||||||||| ||||    
T  23388768 aaacaaaaaatgacctatattacaggctaaaacaccattaaccctttatt 23388719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 52491618 - 52491572
Alignment:
Q  1 aaacaaaaaatgacctatattacat--ggtaaatcaccattaaccct 45  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||    
T  52491618 aaacaaaaaatgacctatattacatggggtaaaacaccattaaccct 52491572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 53667725 - 53667679
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 45  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||    
T  53667725 aaacaaaaaatgacctatattacagggggtaaatcaccattaaccct 53667679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 54012403 - 54012357
Alignment:
Q  1 aaacaaaaaatgacctatattacat--ggtaaatcaccattaaccct 45  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||    
T  54012403 aaacaaaaaatgacctatattacatggggtaaaacaccattaaccct 54012357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13003908 - 13003955
Alignment:
Q  1 aaacaaaaaatgacctatattaca---tggtaaatcaccattaaccct 45  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||    
T  13003908 aaacaaaaaatgacctatattacaagggggtaaatcaccattaaccct 13003955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21549993 - 21550041
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctat 47  Q
    ||||||||||||||||||||||||   |||||| |||||||||||||||    
T  21549993 aaacaaaaaatgacctatattacaggcggtaaagcaccattaaccctat 21550041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1421550 - 1421597
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||    
T  1421550 aaacaaaaaatgacctatattacagggggtacatcaccattaacccta 1421597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3820539 - 3820492
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  3820539 aaacaaaaaatgacctatattacagggggtaaaacaccattaacccta 3820492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31341453 - 31341500
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  31341453 aaacaaaaaatgacctatattacaggaggtaaagcaccattaacccta 31341500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 53523437 - 53523386
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctatatt 50  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||| ||||    
T  53523437 aaacaaaaaatgacctatattacaagaggtaaagcaccattaaccctttatt 53523386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 54087742 - 54087789
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  54087742 aaacaaaaaatgacctatattacagggggtaaaacaccattaacccta 54087789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 55090255 - 55090306
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctatatt 50  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||| ||||    
T  55090255 aaacaaaaaatgacctatattacagggggtaaagcaccattaaccctttatt 55090306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12144792 - 12144840
Alignment:
Q  1 aaacaaaaaatgacctatattaca-tggtaaatcaccattaaccctata 48  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||    
T  12144792 aaacaaaaaatgacctatattacaggggtaaagcaccattaaccctata 12144840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23981167 - 23981121
Alignment:
Q  1 aaacaaaaaatgacctatattacat--ggtaaatcaccattaaccct 45  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||    
T  23981167 aaacaaaaaatgacctatattacatgaggtaaaacaccattaaccct 23981121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8590690 - 8590645
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 44  Q
    ||||||||||||||||||||||||   |||||||||||||||||||    
T  8590690 aaacaaaaaatgacctatattacagggggtaaatcaccattaaccc 8590645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9884999 - 9884954
Alignment:
Q  1 aaacaaaaaatgacctatattaca-tggtaaatcaccattaaccct 45  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||    
T  9884999 aaacaaaaaatgacctatattacaggggtaaaacaccattaaccct 9884954  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3475531 - 3475484
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  3475531 aaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 3475484  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12878720 - 12878673
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  12878720 aaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 12878673  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13033138 - 13033185
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  13033138 aaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 13033185  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15782307 - 15782260
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  15782307 aaacaaaaaatgacctatattacaaggggtaaagcaccattaacccta 15782260  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28292098 - 28292051
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  28292098 aaacaaaaaatgacctatattacagggggtaaaacaccattaacccta 28292051  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 48613105 - 48613061
Alignment:
Q  1 aaacaaaaaatgacctatattaca-tggtaaatcaccattaaccc 44  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||    
T  48613105 aaacaaaaaatgacctatattacaggggtaaagcaccattaaccc 48613061  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1309831 - 1309785
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 45  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||    
T  1309831 aaacaaaaaatgacctatattacagggggtaaatcaccattaaccct 1309785  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24602475 - 24602428
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  24602475 aaacaaaaaatgacctatattacaaggggtaaagcaccattaacccta 24602428  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31826418 - 31826468
Alignment:
Q  1 aaacaaaaaatgacctatattaca---tggtaaatcaccattaaccctata 48  Q
    ||||||||||||||||||||||||    |||||| ||||||||||||||||    
T  31826418 aaacaaaaaatgacctatattacaggggggtaaaacaccattaaccctata 31826468  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 43585410 - 43585368
Alignment:
Q  1 aaacaaaaaatgacctatattacatggtaaatcaccattaacc 43  Q
    |||||||||||||||||||||||  |||||| |||||||||||    
T  43585410 aaacaaaaaatgacctatattacggggtaaaacaccattaacc 43585368  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3448884 - 3448935
Alignment:
Q  1 aaacaaaaaatgacctatattacatgg--taaatcaccattaaccctatatt 50  Q
    |||||||||||||||||||||||| ||  |||| ||||||||||| ||||||    
T  3448884 aaacaaaaaatgacctatattacaggggataaaacaccattaaccttatatt 3448935  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11961115 - 11961162
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  11961115 aaacaaaaaatgacctatattacagggggtaaaccaccattaacccta 11961162  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22686788 - 22686741
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  22686788 aaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 22686741  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23564147 - 23564100
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  23564147 aaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 23564100  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23566138 - 23566182
Alignment:
Q  1 aaacaaaaaatgacctatattaca-tggtaaatcaccattaaccc 44  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||    
T  23566138 aaacaaaaaatgacctatattacaggggtaaagcaccattaaccc 23566182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31343410 - 31343356
Alignment:
Q  1 aaacaaaaaatgacctatattacatgg---taaatcaccattaaccctatattct 52  Q
    |||| ||||||||||||||||||| ||   |||| ||||||||||||||||||||    
T  31343410 aaaccaaaaatgacctatattacaggggggtaaagcaccattaaccctatattct 31343356  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38132073 - 38132120
Alignment:
Q  1 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 46  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  38132073 aaacaaaaaatgacctatattacagggggtaaaacaccattaacccta 38132120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38687523 - 38687570
Alignment:
Q  1 aaacaaaaaatgacctatattacatgg--taaatcaccattaacccta 46  Q
    |||||||||||||||||||||||| ||  |||| ||||||||||||||    
T  38687523 aaacaaaaaatgacctatattacaggggataaaacaccattaacccta 38687570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15710807 - 15710852
Alignment:
Q  1 aaacaaaaaatgacctatattac-atggtaaatcaccattaaccct 45  Q
    ||||||||||||||||||||||| | |||||| |||||||||||||    
T  15710807 aaacaaaaaatgacctatattacaagggtaaagcaccattaaccct 15710852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28943653 - 28943698
Alignment:
Q  1 aaacaaaaaatgacctatattacatggtaaatcaccattaacccta 46  Q
    |||||||||||||||||||||||| | |||| |||| |||||||||    
T  28943653 aaacaaaaaatgacctatattacaagataaaacaccgttaacccta 28943698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10176482 - 10176431
Alignment:
Q  1 aaacaaaaaatgacctatattac--atggtaaatcaccattaaccctatatt 50  Q
    |||||||||||||||||||||||    |||||| ||||||||||||||||||    
T  10176482 aaacaaaaaatgacctatattacggggggtaaagcaccattaaccctatatt 10176431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16555541 - 16555588
Alignment:
Q  1 aaacaaaaaatgacctatattacatg--gtaaatcaccattaacccta 46  Q
    |||||||||||||||||||||||| |  ||||| ||||||||||||||    
T  16555541 aaacaaaaaatgacctatattacagggagtaaagcaccattaacccta 16555588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37847647 - 37847600
Alignment:
Q  1 aaacaaaaaatgacctatattacat--ggtaaatcaccattaacccta 46  Q
    ||||||||||||| |||||||||||  |||||| ||||||||||||||    
T  37847647 aaacaaaaaatgaactatattacatggggtaaagcaccattaacccta 37847600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 46583871 - 46583820
Alignment:
Q  1 aaacaaaaaatgacctatattac--atggtaaatcaccattaaccctatatt 50  Q
    |||||||||||||||||||||||  | |||||| |||||||||||| |||||    
T  46583871 aaacaaaaaatgacctatattacagagggtaaagcaccattaacccaatatt 46583820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4313 - 4357
Alignment:
Q  1 aaacaaaaaatgacctatattaca-tggtaaatcaccattaaccc 44  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||    
T  4313 aaacaaaaaatgacctatattacaggggtaaagcaccattaaccc 4357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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