View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11191_low_2 (Length: 615)

Name: NF11191_low_2
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11191_low_2
NF11191_low_2
[»] chr4 (3 HSPs)
chr4 (17-330)||(49541708-49542023)
chr4 (329-605)||(49541394-49541668)
chr4 (27-329)||(40917167-40917482)
[»] chr8 (2 HSPs)
chr8 (27-329)||(2883859-2884174)
chr8 (27-329)||(3150392-3150707)
[»] chr7 (3 HSPs)
chr7 (76-325)||(29251423-29251671)
chr7 (27-74)||(29251360-29251407)
chr7 (80-178)||(29254665-29254763)
[»] chr1 (2 HSPs)
chr1 (79-234)||(1086830-1086980)
chr1 (32-75)||(1086769-1086812)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 49542023 - 49541708
Alignment:
Q  17 aataatgacgccataggagatcttcgtgcagagttgacaaactctgatatgcctttggtgaaataaaaagttttccaactttctaatatctatatcatat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49542023 aataatgacgccataggagatcttcgtgcagagttgacaaactgtgatatgcctttggtgaaataaaaagttttccaactttctaatatctatatcatat 49541924  T
Q  117 gtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgacatcgatctgctgttaagaataaccagaaggatggtgccgca 216  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49541923 gtacaactccagtatttaggaggaggtaatttt-gggtgcgtttggtcccatcaacgacatcgatctgctgttaagaataaccagaaggatggtgccgca 49541825  T
Q  217 actcaaaagctgcacaatgacagtaaaaatatggatagaactgcagatggggttcccaaaata---tcatcctgtgttagcggtgagggtgatgatttaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||||||||    
T  49541824 actcaaaagctgcacaatgacagtaaaaatatggatagaactgcagatggagttcccaaaatattctcatcctgtgttagcagtgagggtgatgatttaa 49541725  T
Q  314 aatcattccaatctatg 330  Q
    |||||||||||||||||    
T  49541724 aatcattccaatctatg 49541708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 329 - 605
Target Start/End: Complemental strand, 49541668 - 49541394
Alignment:
Q  329 tgattatggctatcattttacaaaatagtcataatttttattgcctgctaggaatttctcatgaaataataacttcatattatcttaaatttaattnnnn 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  49541668 tgattatggctatcattttacaaaatagtcataatttttattgcctgctaggaatttctcatgaaataataacttcatattatcttaaatttaattaaaa 49541569  T
Q  429 nnngaaccaaacaacaactcatcagacattggggtatatcaatactttgtttggtaataacgtttctaatcgaacttatgttcagtgtccgacactaaca 528  Q
       |||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||    
T  49541568 aaagaaccaaacaacaactcatcagacattgtggtatttcagtactttgtttggtaataacgtttctaatcgaacgtgtgtccagtgtctgacactaaca 49541469  T
Q  529 tgacactcatatatgtaattaaattcaactataannnnnnnnnncttcaaattattaataatatcagcgtatctgtg 605  Q
    ||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  49541468 tgacactcatatatgtaattaaattcaactataa--ttttttttcttcaaattattaataatatcagcgtatctgtg 49541394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 27 - 329
Target Start/End: Complemental strand, 40917482 - 40917167
Alignment:
Q  27 ccataggagatcttcgtgcagagttgacaaactctgatatgcctttggt--------------gaaataaaaagttttccaactttctaatatctatatc 112  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||              ||||||||||||||||| |||||||||||||||||||    
T  40917482 ccataggagatcttcgtgcagagttgacaaagtgtgatgtgcctttggttaaacgcttctatggaaataaaaagttttccgactttctaatatctatatc 40917383  T
Q  113 atatgtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgacatcgatctgctgttaagaataaccagaaggatggtgc 212  Q
    ||||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||||||||    |||||||||||||||||||||||||||||||||    
T  40917382 atatgtagagctccagtatttaggaggagataatttttgggtgtgtttggtcccatcaacgac----atctgctgttaagaataaccagaaggatggtgc 40917287  T
Q  213 cgcaactcaaaagctgcacaatgacagtaaaaatatggatagaactgcagatggggttcccaaaata---tcatcctgtgttagcggtgagggtgatgat 309  Q
    | ||||||||||  ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||   ||||| ||||||||| | ||||||||||||    
T  40917286 cacaactcaaaaagtgcgcaatgacggtaaaaatatggatagaagtgcagatggggttcccaaaatatcctcatcgtgtgttagcagcgagggtgatgat 40917187  T
Q  310 ttaaaatcattccaatctat 329  Q
    ||||||||||||||||||||    
T  40917186 ttaaaatcattccaatctat 40917167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 27 - 329
Target Start/End: Original strand, 2883859 - 2884174
Alignment:
Q  27 ccataggagatcttcgtgcagagttgacaaactctgatatgcctttggt--------------gaaataaaaagttttccaactttctaatatctatatc 112  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||              |||||||||||||||||||||| ||||||||||| ||    
T  2883859 ccataggagatcttcgtgcagagttgacaaactgtgatatgcctttggttaaacgtttctatggaaataaaaagttttccaacttcctaatatctatgtc 2883958  T
Q  113 atatgtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgacatcgatctgctgttaagaataaccagaaggatggtgc 212  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||    |||||||||||||||||||||||| ||||||||    
T  2883959 atatgtacaactccagtatttaggaggagataatttttgggtttgtttggtcccatcaacgac----atctgctgttaagaataaccagaacgatggtgc 2884054  T
Q  213 cgcaactcaaaagctgcacaatgacagtaaaaatatggatagaactgcagatggggttcccaaaata---tcatcctgtgttagcggtgagggtgatgat 309  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||| |||||| |||||||||||||||   ||||| ||||||| | | ||||||||||||    
T  2884055 cgcaactcaaaagttgcccaatgacggtaaaaatatggatagaagtgcagacggggttcccaaaatatcctcatcgtgtgttaacagcgagggtgatgat 2884154  T
Q  310 ttaaaatcattccaatctat 329  Q
    ||||||||||||||||||||    
T  2884155 ttaaaatcattccaatctat 2884174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 27 - 329
Target Start/End: Complemental strand, 3150707 - 3150392
Alignment:
Q  27 ccataggagatcttcgtgcagagttgacaaactctgatatgcctttggt--------------gaaataaaaagttttccaactttctaatatctatatc 112  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||              |||||||||||||||||||||| ||||||||||| ||    
T  3150707 ccataggagatcttcgtgcagagttgacaaactgtgatatgcctttggttaaacgtttctatggaaataaaaagttttccaacttcctaatatctatgtc 3150608  T
Q  113 atatgtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgacatcgatctgctgttaagaataaccagaaggatggtgc 212  Q
    ||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||||||    |||||||||||||||||||||||| ||||||||    
T  3150607 atatgtacaactccagtatttaggaggaaataatttttgggtttgtttggtcccatcaacgac----atctgctgttaagaataaccagaacgatggtgc 3150512  T
Q  213 cgcaactcaaaagctgcacaatgacagtaaaaatatggatagaactgcagatggggttcccaaaata---tcatcctgtgttagcggtgagggtgatgat 309  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||| |||||| |||||||||||||||   ||||| ||||||| | ||||||||||||||    
T  3150511 cgcaactcaaaagttgcccaatgacggtaaaaatatggatagaagtgcagacggggttcccaaaatatcctcatcgtgtgttaacagtgagggtgatgat 3150412  T
Q  310 ttaaaatcattccaatctat 329  Q
    ||||||||||||||||||||    
T  3150411 ttaaaatcattccaatctat 3150392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 76 - 325
Target Start/End: Original strand, 29251423 - 29251671
Alignment:
Q  76 gaaataaaaagttttccaactttctaatatctatatcatatgtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgac 175  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||    
T  29251423 gaaataaaaagttttccgactttctagtatctatgtcatatgtacaactccaatatttaggaggaggtaatttttgggtgcgcttggtcccatcaactac 29251522  T
Q  176 atcgatctgctgttaagaataaccagaaggatggtgccgcaactcaaaagctgcacaatgacagtaaaaatatggatagaactgcagatggggttcccaa 275  Q
        |||||||||||||||||| ||||| ||| ||| |  ||||||||| || ||  ||||  |||||||||||||||||| |||||||||||||||||     
T  29251523 ----atctgctgttaagaataagcagaaagattgtgtcctaactcaaaatctacatgatgagggtaaaaatatggatagaagtgcagatggggttcccag 29251618  T
Q  276 aata---tcatcctgtgttagcggtgagggtgatgatttaaaatcattccaat 325  Q
    ||||   ||||| ||||||||| | |||||||||||| |||||||||| ||||    
T  29251619 aatatcctcatcgtgtgttagctgcgagggtgatgatctaaaatcatttcaat 29251671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 29251360 - 29251407
Alignment:
Q  27 ccataggagatcttcgtgcagagttgacaaactctgatatgcctttgg 74  Q
    |||| |||||||||||||||||||||||||| | |||| |||||||||    
T  29251360 ccatcggagatcttcgtgcagagttgacaaagtgtgatctgcctttgg 29251407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 29254665 - 29254763
Alignment:
Q  80 taaaaagttttccaactttctaatatctatatcatatgtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgacatc 178  Q
    ||||||| |||||||| |||||  ||||||| || |||||||||||  |||| ||||||  | ||||||||| || |||||| | |||||||| |||||    
T  29254665 taaaaagctttccaacattctagcatctataccagatgtacaactcttgtatataggagatgataatttttgtgtacgtttgatgccatcaacaacatc 29254763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 1086830 - 1086980
Alignment:
Q  79 ataaaaagttttccaactttctaatatctatatcatatgtacaactccagtatttaggaggaggtaatttttgggtgcgtttggtcccatcaacgacatc 178  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||| |||| | ||||||||| |||||||||||| ||||||       
T  1086830 ataaaaagttttccaactttctagtatctataccacatgtacaactcgagtatttaggagaaggtga-ttttgggtgtgtttggtcccattaacgac--- 1086925  T
Q  179 gatctgctgttaagaataaccagaaggatggtgccgcaactcaaaagctgcacaat 234  Q
     ||||| |||||||||||| ||||| |||||||||  |||||||||||| ||||||    
T  1086926 -atctgttgttaagaataagcagaatgatggtgccataactcaaaagctacacaat 1086980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 1086769 - 1086812
Alignment:
Q  32 ggagatcttcgtgcagagttgacaaactctgatatgcctttggt 75  Q
    |||||||||||||||||||||||||| | |||| ||||||||||    
T  1086769 ggagatcttcgtgcagagttgacaaagtgtgatctgcctttggt 1086812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University