View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11191_low_4 (Length: 559)
Name: NF11191_low_4
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11191_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 6 - 543
Target Start/End: Original strand, 33592093 - 33592640
Alignment:
| Q |
6 |
agcaaagggagttatgttacgtctttattctaactactgtatactaatactaatgtgtgtggttgttaattttgtgtactcttgtactcagattttgcaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33592093 |
agcaaagggagttatgttacgtctttattctaactactgtatactaatactaatgtgtgtggttgtaaattttgtgtactcttgtactcagattttgcaa |
33592192 |
T |
|
| Q |
106 |
tcaattgtatgaaaacaaaaagcataatttaatcatgggtgtaccaatcattatcaaaaattatatgacacatcaaaatgtcccatatatataaccgtgt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33592193 |
tcaattgtatgaaaacaaaaagcataatttaatcatgggtgtaccaatcattaccaaaaattatatgacacatcaaaatgtcctatatatataaccgtgt |
33592292 |
T |
|
| Q |
206 |
tatttagatataaacaaaa---------attaatggcaaaatgaaatatattaacaacaaaagagcgatacaaatgttttacaacacgaccagcaagacc |
296 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
33592293 |
tatttagatataaaaaaaaaaaaaaaaaattaatggcaaaatgaaatatattaacaacaaaagagcgatacaaatgttttacaacaagaccagcaagagc |
33592392 |
T |
|
| Q |
297 |
attaggagtacccgaagatacgaataagcctggatgtcggacccggatagaaggaaattatagtataaaagttgcaaagtgtttaaatattccggggtaa |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33592393 |
attaggagtacccgaagatacgaataagcctggatgtcggacccggatagaaggaaattatagtataaaagttgcaaagtgtttaaatattctggggtaa |
33592492 |
T |
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| Q |
397 |
tgtcgga-tttttggtgtcaaaaacacatttttcatctatgtatgtgaaaaacatgtacgaagcaaaattattttttaatgttcatgatttgtgaagtat |
495 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33592493 |
tgtcggattttttggtgtcaaaaacacatttttcatctatgtatgtgaaaaacatgtacgaagcaaaattattttttaatgttcatgatttgtgaagtat |
33592592 |
T |
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| Q |
496 |
aatcagcaaacatgtgctcttaatttttcttactgtgagtattatcat |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33592593 |
aatcagcaaacatgtgctcttaatttttcttactgtgagtattatcat |
33592640 |
T |
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