View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11191_low_7 (Length: 448)
Name: NF11191_low_7
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11191_low_7 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 28 - 444
Target Start/End: Complemental strand, 12333621 - 12333203
Alignment:
| Q |
28 |
ttctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaactt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12333621 |
ttctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaactt |
12333522 |
T |
|
| Q |
128 |
tagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatct-nnnnnnnntaaatca |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12333521 |
tagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatctaaaaaaaaataaatca |
12333422 |
T |
|
| Q |
227 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgc-nnnnnnn |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12333421 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcaaaaaaaa |
12333322 |
T |
|
| Q |
326 |
ntgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaat |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12333321 |
atgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaat |
12333222 |
T |
|
| Q |
426 |
attgctacctatgctactc |
444 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
12333221 |
attgctacctatactactc |
12333203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 28 - 444
Target Start/End: Original strand, 6951114 - 6951532
Alignment:
| Q |
28 |
ttctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaactt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6951114 |
ttctcttttcttcctatcttatgaactttaaggtgtatgaagttttatttcctatttgatatttttatttaagtgggttgatagagagtccatttaactt |
6951213 |
T |
|
| Q |
128 |
tagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatct-nnnnnnnntaaatca |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6951214 |
tagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatctaaaaaaaaataaatca |
6951313 |
T |
|
| Q |
227 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgc-nnnnnnn |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6951314 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcaaaaaaaa |
6951413 |
T |
|
| Q |
326 |
ntgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaat |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6951414 |
atgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaat |
6951513 |
T |
|
| Q |
426 |
attgctacctatgctactc |
444 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
6951514 |
attgctacctatactactc |
6951532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 28 - 444
Target Start/End: Complemental strand, 18186975 - 18186557
Alignment:
| Q |
28 |
ttctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaactt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18186975 |
ttctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaactt |
18186876 |
T |
|
| Q |
128 |
tagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatct-nnnnnnnntaaatca |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18186875 |
tagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatctaaaaaaaaataaatca |
18186776 |
T |
|
| Q |
227 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgc-nnnnnnn |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18186775 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcaaaaaaaa |
18186676 |
T |
|
| Q |
326 |
ntgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaat |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18186675 |
atgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaat |
18186576 |
T |
|
| Q |
426 |
attgctacctatgctactc |
444 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
18186575 |
attgctacctatactactc |
18186557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 32097895 - 32097845
Alignment:
| Q |
73 |
catttcctatttgatatttttatttaagtgggttgatagagagtccattta |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32097895 |
catttcctatttgatatttttatttaagtaggttgatagagagtccattta |
32097845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 28 - 444
Target Start/End: Original strand, 13241954 - 13242372
Alignment:
| Q |
28 |
ttctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaactt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13241954 |
ttctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaactt |
13242053 |
T |
|
| Q |
128 |
tagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatct-nnnnnnnntaaatca |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13242054 |
tagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatctaaaaaaaaataaatca |
13242153 |
T |
|
| Q |
227 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgc-nnnnnnn |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13242154 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcaaaaaaaa |
13242253 |
T |
|
| Q |
326 |
ntgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaat |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13242254 |
atgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaat |
13242353 |
T |
|
| Q |
426 |
attgctacctatgctactc |
444 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
13242354 |
attgctacctatactactc |
13242372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 54835364 - 54835547
Alignment:
| Q |
28 |
ttctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaactt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54835364 |
ttctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaactt |
54835463 |
T |
|
| Q |
128 |
tagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54835464 |
tagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatct |
54835547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 31898036 - 31898104
Alignment:
| Q |
227 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctat |
295 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31898036 |
gagcacagggagtcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctat |
31898104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 31913745 - 31913813
Alignment:
| Q |
227 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctat |
295 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31913745 |
gagcacagggagtcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctat |
31913813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 31947393 - 31947461
Alignment:
| Q |
227 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctat |
295 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31947393 |
gagcacagggagtcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctat |
31947461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 29007097 - 29007060
Alignment:
| Q |
28 |
ttctcttttcttcctatcttatgaactttaaggtgtat |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007097 |
ttctcttttcttcctatcttatgaactttaaggtgtat |
29007060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 39507281 - 39507414
Alignment:
| Q |
28 |
ttctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaactt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39507281 |
ttctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaactt |
39507380 |
T |
|
| Q |
128 |
tagttgatccaggccaaaagcagacctacgtcag |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
39507381 |
tagttgatccaggccaaaagcagacctacgtcag |
39507414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 220 - 437
Target Start/End: Original strand, 39507422 - 39507653
Alignment:
| Q |
220 |
taaatcagagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgc- |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39507422 |
taaatcagagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtaaactaattgatatttctatcggttaatgaaaaagcccaatgca |
39507521 |
T |
|
| Q |
319 |
-------------nnnnnnnntgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggtt |
405 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
39507522 |
aaaaaaaaaaaaaaaaaaaaatgcatgttgggtttttaaaacaattcaaatcattttgataataatagtttaatctattttaccgagaagctctacggtt |
39507621 |
T |
|
| Q |
406 |
cgagtccgtatagccctaatattgctacctat |
437 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
39507622 |
cgagtccgtatagccataatattgctacctat |
39507653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 258 - 427
Target Start/End: Complemental strand, 251011 - 250843
Alignment:
| Q |
258 |
gtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcnnnnnnnntgcacgttgggtttttaaaacaattcaaatc |
357 |
Q |
| |
|
||||||||||| ||||| |||||| |||| ||| ||||||| |||||| |||||||||| |||| ||||||| ||| ||||| |||||||| |
|
|
| T |
251011 |
gtaaagaaaaactatggtggactaactgatctttaaatcagtttatgaaagagcccaatgcaaaaaaa-tgcatgttgggtctttgaaacagttcaaatc |
250913 |
T |
|
| Q |
358 |
attttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaatat |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
250912 |
attttgataataatagtttgatctgttttaccgagaaggtctacggttcgaatccgtatagccctaatat |
250843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 42762710 - 42762777
Alignment:
| Q |
333 |
ttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtcta |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||| || ||||||||| |||| ||||| |
|
|
| T |
42762710 |
ttggatttttaaaacaattcaaatcattttgataataataattttatttgttttacctagaaagtcta |
42762777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 1132401 - 1132369
Alignment:
| Q |
377 |
gatctgttttaccgagaaggtctacggttcgag |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1132401 |
gatctgttttaccgagaaggtctacggttcgag |
1132369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University