View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11191_low_8 (Length: 409)

Name: NF11191_low_8
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11191_low_8
NF11191_low_8
[»] chr4 (4 HSPs)
chr4 (1-393)||(15555065-15555457)
chr4 (136-369)||(37147432-37147664)
chr4 (154-354)||(35154162-35154362)
chr4 (154-369)||(35160538-35160753)
[»] chr8 (3 HSPs)
chr8 (151-369)||(9677513-9677731)
chr8 (154-369)||(9693257-9693472)
chr8 (122-199)||(21465787-21465864)
[»] chr3 (11 HSPs)
chr3 (95-357)||(47398131-47398397)
chr3 (272-389)||(46507118-46507238)
chr3 (154-393)||(46490027-46490266)
chr3 (88-369)||(46469709-46469990)
chr3 (151-395)||(45900889-45901133)
chr3 (88-351)||(46478327-46478590)
chr3 (154-393)||(5155263-5155502)
chr3 (226-357)||(46497380-46497511)
chr3 (154-342)||(47414838-47415026)
chr3 (155-218)||(46550160-46550223)
chr3 (151-234)||(4582375-4582458)
[»] chr2 (3 HSPs)
chr2 (154-214)||(20143684-20143744)
chr2 (154-214)||(20169766-20169826)
chr2 (262-329)||(20143578-20143645)
[»] chr7 (4 HSPs)
chr7 (154-231)||(17734673-17734750)
chr7 (155-199)||(16729594-16729638)
chr7 (155-199)||(17706666-17706710)
chr7 (155-199)||(17716654-17716698)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 15555457 - 15555065
Alignment:
Q  1 aatttgatagaaaacaaacatggattcctaaactaaacttatgaaaatagaacaatgaaatnnnnnnnggaaaccctaaaacacattacataccttgttc 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  15555457 aatttgatagaaaacaaacatggattcctaaaataaacttatgaaaatagaacaatgaaataaaaaaaggaaaccctaaaacacattacataccttgttc 15555358  T
Q  101 tggaaaccaacggaagccaacttggcttggaaatcagaagaaacaatcttttggaaggaagtttgaagagaaagggtttgttcaacccacacaccattgg 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15555357 tggaaatcaacggaagccaacttggcttggaaatcagaagaaacaatcttttggaaggaagtttgaagagaaagggtttgctcaacccacacaccattgg 15555258  T
Q  201 cgacagagaggcgaggcccaccggagggagcagcgtctttgaggatgacggaaatgaggcgagagatgacggagttgagttgatggatggatttgaagcc 300  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||     
T  15555257 cgacagagaggcaaggcccgccggagggagcagcgtctttgaggatgacggaaacgaggcgagagatgacggagttgagttgatggatggatttaaagcg 15555158  T
Q  301 gaggaagtcgagaagttgttgctgtgtggaaccctcagagccggaagcgatgatgctgagaataacttgaatcgagagtggtgaaaacacaat 393  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15555157 gaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgagaataacttgaatcgagagaggtgaaaacacaat 15555065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 136 - 369
Target Start/End: Complemental strand, 37147664 - 37147432
Alignment:
Q  136 agaagaaacaatcttttggaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcgaggcccaccggagggagcagcg 235  Q
    |||||| ||||| | || |||||||  |||||||||||| | |||||||| ||||||||||||||| ||||| ||||||||||  ||| | |||||||||    
T  37147664 agaagacacaatttgtttgaaggaatgttgaagagaaagtgattgttcaatccacacaccattggctacagaaaggcgaggccgcccgca-ggagcagcg 37147566  T
Q  236 tctttgaggatgacggaaatgaggcgagagatgacggagttgagttgatggatggatttgaagccgaggaagtcgagaagttgttgctgtgtggaaccct 335  Q
    ||||||||||||| |||||  ||  |||| | ||   ||||||  |||| ||||||||| ||| ||||||||||||||| |||||| ||||||| |||||    
T  37147565 tctttgaggatgatggaaacaagctgagaaacgaataagttgacatgattgatggatttaaagtcgaggaagtcgagaatttgttgttgtgtgggaccct 37147466  T
Q  336 cagagccggaagcgatgatgctgagaataacttg 369  Q
      ||||| | |||||| || || |||| ||||||    
T  37147465 tggagccagcagcgataatacttagaacaacttg 37147432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 354
Target Start/End: Complemental strand, 35154362 - 35154162
Alignment:
Q  154 gaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcgaggcccaccggagggagcagcgtctttgaggatgacggaa 253  Q
    |||||||| |||| ||||||||||||  || | |||||||| |||| | | | |||||||||| |||   || |||| ||||||||||| ||||||||||    
T  35154362 gaaggaaggttgaggagaaagggttttgtccagccacacactattgacaaaaaagaggcgaggaccatgagaaggagtagcgtctttgaagatgacggaa 35154263  T
Q  254 atgaggcgagagatgacggagttgagttgatggatggatttgaagccgaggaagtcgagaagttgttgctgtgtggaaccctcagagccggaagcgatga 353  Q
    |||||  |||||| || ||||||||| |||| |  |||||||||   |||||||| |||||| |||||  |||||||||| |||||||| | ||||||||    
T  35154262 atgagttgagagacgaaggagttgagatgataggcggatttgaattggaggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagcgatga 35154163  T
Q  354 t 354  Q
    |    
T  35154162 t 35154162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 369
Target Start/End: Complemental strand, 35160753 - 35160538
Alignment:
Q  154 gaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcgaggcccaccggagggagcagcgtctttgaggatgacggaa 253  Q
    |||||||| ||||||||||||||||| ||| | ||| ||||| | | ||| ||||||| |||| |||||||| | || ||||||||||||||||| ||||    
T  35160753 gaaggaagattgaagagaaagggttttttccagccaaacaccgtcgacgaaagagaggtgaggaccaccggaagaagtagcgtctttgaggatgatggaa 35160654  T
Q  254 atgaggcgagaga-tgacggagttgagttgatggatggatttgaagccgaggaagtcgagaagttgttgctgtgtggaaccctcagagccggaagcgatg 352  Q
    |   |  |||||| ||| ||||||||| ||||   |||||||||| | ||||||||| ||||| ||||| ||||| |||||||||||||| | || |||     
T  35160653 agttgatgagagactga-ggagttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgatt 35160555  T
Q  353 atgctgagaataacttg 369  Q
    |||||||| | ||||||    
T  35160554 atgctgagcacaacttg 35160538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 151 - 369
Target Start/End: Original strand, 9677513 - 9677731
Alignment:
Q  151 ttggaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcgaggcccaccggagggagcagcgtctttgaggatgacg 250  Q
    ||||||||||| ||||||||||||| |||  || ||||| ||||||||||||| |||||||||||| |||||||| | ||| || |||||||||| |||     
T  9677513 ttggaaggaaggttgaagagaaaggtttttctccacccatacaccattggcgaaagagaggcgaggaccaccggaagaagctgcatctttgaggaggaca 9677612  T
Q  251 gaaatgaggcgagagatgacggagttgagttgatggatggatttgaagccgaggaagtcgagaagttgttgctgtgtggaaccctcagagccggaagcga 350  Q
    |||| |||  |||||| || ||||||||| |||| |||||||||||| | ||||||||||||||| ||||| || || | |||||||||||| | |||||    
T  9677613 gaaaggagatgagagacgaaggagttgagatgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcga 9677712  T
Q  351 tgatgctgagaataacttg 369  Q
    |||| ||||||| ||||||    
T  9677713 tgatactgagaacaacttg 9677731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 369
Target Start/End: Original strand, 9693257 - 9693472
Alignment:
Q  154 gaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcgaggcccaccggagggagcagcgtctttgaggatgacggaa 253  Q
    |||||||| |||||||||||||||||  || ||||||||||||||||||| ||||||| |||| |||||||| | ||  ||||||||||||| |||  ||    
T  9693257 gaaggaaggttgaagagaaagggttttctctacccacacaccattggcgaaagagaggtgaggaccaccggaagaagttgcgtctttgaggaggacataa 9693356  T
Q  254 atgaggcgagagatgacggagttgagttgatggatggatttgaagccgaggaagtcgagaagttgttgctgtgtggaaccctcagagccggaagcgatga 353  Q
    | |||  ||||||  | | ||||||| |||| |||||||||||| | ||||||||| ||||| ||||| || || | ||| ||||||||   ||||||||    
T  9693357 aggagatgagagacaaagaagttgagatgatcgatggatttgaaacggaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatga 9693456  T
Q  354 tgctgagaataacttg 369  Q
    ||||||||| ||||||    
T  9693457 tgctgagaacaacttg 9693472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 21465787 - 21465864
Alignment:
Q  122 ttggcttggaaatcagaagaaacaatcttttggaaggaagtttgaagagaaagggtttgttcaacccacacaccattg 199  Q
    ||||||| |||||||| ||  ||||| ||| ||||||||| |||||||||||| | |||||||||||||| |||||||    
T  21465787 ttggctttgaaatcagtagctacaatttttcggaaggaaggttgaagagaaagtgattgttcaacccacataccattg 21465864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 95 - 357
Target Start/End: Original strand, 47398131 - 47398397
Alignment:
Q  95 ttgttctggaaaccaacggaagccaacttggcttggaaatcagaagaaa----caatcttttggaaggaagtttgaagagaaagggtttgttcaacccac 190  Q
    ||||| |||||| ||||||||||||| ||||||| | |||||| ||  |    |||| | || |||||||| ||||||||||||||||||||||||||||    
T  47398131 ttgttttggaaatcaacggaagccaaattggctttgtaatcagtagctagctacaatttgtttgaaggaaggttgaagagaaagggtttgttcaacccac 47398230  T
Q  191 acaccattggcgacagagaggcgaggcccaccggagggagcagcgtctttgaggatgacggaaatgaggcgagagatgacggagttgagttgatggatgg 290  Q
    || |||||| ||| |||||||||||| ||| ||| ||||| ||| || ||||| | ||| |||| |||  |||||  || ||||||||| || |   |||    
T  47398231 acgccattgacgaaagagaggcgaggtccatcggtgggagaagcatccttgagtacgactgaaaggagatgagaggcgaaggagttgagatgttcagtgg 47398330  T
Q  291 atttgaagccgaggaagtcgagaagttgttgctgtgtggaaccctcagagccggaagcgatgatgct 357  Q
    | ||| | || |||||||||||||| | ||| ||||||| |||||||||||| | |||| |||||||    
T  47398331 acttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcgttgatgct 47398397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 46507118 - 46507238
Alignment:
Q  272 gagttgagttgatggatggatttgaagccgaggaagtcgagaagttgttgctgtgtggaaccctcagagccggaagcgat---gatgctgagaataactt 368  Q
    |||||||| |||||||| |||||| ||| ||||||||| ||||  ||||| || |||| |||||||||||||| ||||||   |||||||||||||||||    
T  46507118 gagttgagatgatggatagatttggagcagaggaagtcaagaatctgttgttgagtgggaccctcagagccggcagcgattatgatgctgagaataactt 46507217  T
Q  369 gaatcgagagtggtgaaaaca 389  Q
    |||||||||||||||||||||    
T  46507218 gaatcgagagtggtgaaaaca 46507238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 393
Target Start/End: Complemental strand, 46490266 - 46490027
Alignment:
Q  154 gaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcgaggcccaccggagggagcagcgtctttgaggatgacggaa 253  Q
    |||||||| ||||||||||||||||| ||| ||||||||||| | | | | |||||| ||||| || || | ||||||| |||||||||| |||||||||    
T  46490266 gaaggaaggttgaagagaaagggttttttccacccacacaccgtcgacaaaagagagacgaggtccgccagcgggagcaccgtctttgagaatgacggaa 46490167  T
Q  254 atgaggcgagagatgacggagttgagttgatggatggatttgaagccgaggaagtcgagaagttgttgctgtgtggaaccctcagagccggaagcgatga 353  Q
    | |||   ||||  ||  ||||||||||||| | |||| ||  |   ||||||||| ||||| ||||| |||||||| || |||||||| | ||||||||    
T  46490166 acgagcttagaggcgaatgagttgagttgatcggtggagttagattggaggaagtcaagaagctgttgttgtgtggagccgtcagagccagcagcgatga 46490067  T
Q  354 tgctgagaataacttgaatcgagagtggtgaaaacacaat 393  Q
    ||||||| | |||||| | ||| ||||| || ||||||||    
T  46490066 tgctgagtacaacttggagcgaaagtggcgataacacaat 46490027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 88 - 369
Target Start/End: Complemental strand, 46469990 - 46469709
Alignment:
Q  88 acataccttgttctggaaaccaacggaagccaacttggcttggaaatcagaagaaacaatcttttggaaggaagtttgaagagaaagggtttgttcaacc 187  Q
    ||||||||||||||||||| |||||||||||||  ||||||   |||||| |   |   | | || |||||||| |||||||||||||||||| ||||||    
T  46469990 acataccttgttctggaaatcaacggaagccaaagtggctttataatcagtaaccattgtttctttgaaggaaggttgaagagaaagggtttgatcaacc 46469891  T
Q  188 cacacaccattggcgacagagaggcgaggcccaccggagggagcagcgtctttgaggatgacggaaatgaggcgagagatgacggagttgagttgatgga 287  Q
    |||||||  | || || ||||||||| | ||||||||| |||||||| ||    ||||||| ||||| |||  ||||  ||| ||||||||| || | ||    
T  46469890 cacacacgttgggtgaaagagaggcgcgacccaccggaaggagcagcatcagataggatgatggaaacgagatgagaagtgaaggagttgagatggtcga 46469791  T
Q  288 tggatttgaagccgaggaagtcgagaagttgttgctgtgtggaaccctcagagccggaagcgatgatgctgagaataacttg 369  Q
    |||||||| | | |||||| |||||||||||||| |||||   |||||||||| | | |||||  ||| |||| ||||||||    
T  46469790 tggatttggaacggaggaattcgagaagttgttgttgtgtacgaccctcagaggcagcagcgacaatgttgagcataacttg 46469709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 395
Target Start/End: Complemental strand, 45901133 - 45900889
Alignment:
Q  151 ttggaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcgaggcccaccggagggagcagcgtctttgaggatgacg 250  Q
    ||||||||||| |||||||||||| ||||| |||||| ||||||||||||| |||||||||| || ||| || |  ||||||||||||| ||||| |||     
T  45901133 ttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccattggcaacagagaggcaagtcccgccagcaggagcagcgtcttggaggacgaca 45901034  T
Q  251 gaaatgaggcgagagatgacggagttgagttgatggatggatttgaagccgaggaagtcgagaagttgttgctgtgtggaaccctcagagccggaagcga 350  Q
    | || ||| ||||||   |  |||||||| || | | ||||||  ||   |||||||| || ||| || || ||||| | ||||||||  || | ||| |    
T  45901033 gtaacgagccgagaggcaaaagagttgagatggtcggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaa 45900934  T
Q  351 tgatgctgagaataacttgaatcgagagtggtgaaaacacaattg 395  Q
    ||||||||||||||||||| | ||||||||| |||||||| ||||    
T  45900933 tgatgctgagaataacttggagcgagagtggagaaaacactattg 45900889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 351
Target Start/End: Complemental strand, 46478590 - 46478327
Alignment:
Q  88 acataccttgttctggaaaccaacggaagccaacttggcttggaaatcagaagaaacaatcttttggaaggaagtttgaagagaaagggtttgttcaacc 187  Q
    ||||||||||||||||||| ||||||||| |||    ||||  |||| ||  || || || | ||||||||||| |||||||||||||||||| ||||||    
T  46478590 acataccttgttctggaaatcaacggaagacaaagctgctttaaaatgagtggacacgatttgttggaaggaaggttgaagagaaagggtttgatcaacc 46478491  T
Q  188 cacacaccattggcgacagagaggcgaggcccaccggagggagcagcgtctttgaggatgacggaaatgaggcgagagatgacggagttgagttgatgga 287  Q
    || ||||| | | ||| ||||||| |||| ||||||| ||||| ||||||   |||||||||||||| |||  | ||   || | ||||||| |||| |     
T  46478490 caaacaccgtcgacgaaagagaggagaggaccaccggcgggagaagcgtcggagaggatgacggaaacgagctgtgaagcgaagtagttgagatgatcgg 46478391  T
Q  288 tggatttgaagccgaggaagtcgagaagttgttgctgtgtggaaccctcagagccggaagcgat 351  Q
    |||||||| |    ||||||| || ||||||||| || |||| ||||||||| || ||||||||    
T  46478390 tggatttggattgaaggaagttgaaaagttgttgttgagtgggaccctcagaaccagaagcgat 46478327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 393
Target Start/End: Complemental strand, 5155502 - 5155263
Alignment:
Q  154 gaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcgaggcccaccggagggagcagcgtctttgaggatgacggaa 253  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||| |||  ||||  ||||| ||||| | ||||||||||||   ||| | ||| |||    
T  5155502 gaaggaaggttgaagagaaagggtttgttcaacccatacaccattgacgaaggagaatcgaggtccacctgtgggagcagcgtcgaagagcacgacagaa 5155403  T
Q  254 atgaggcgagagatgacggagttgagttgatggatggatttgaagccgaggaagtcgagaagttgttgctgtgtggaaccctcagagccggaagcgatga 353  Q
    |  ||  |||||   |    |||||| || |   |||||||| |   ||||||||||||||| ||||| ||||||| |||||||||||| | ||||||||    
T  5155402 acaagttgagaggcaagatcgttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatga 5155303  T
Q  354 tgctgagaataacttgaatcgagagtggtgaaaacacaat 393  Q
    |||| || | ||||||||  || ||||| |||||||||||    
T  5155302 tgcttagtacaacttgaagagacagtggcgaaaacacaat 5155263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 357
Target Start/End: Complemental strand, 46497511 - 46497380
Alignment:
Q  226 gggagcagcgtctttgaggatgacggaaatgaggcgagagatgacggagttgagttgatggatggatttgaagccgaggaagtcgagaagttgttgctgt 325  Q
    ||||||||||||||| || |||||||| | ||||  ||||  || |||||||||||||| | |||||||| |   |||||||| |||||||||||| |||    
T  46497511 gggagcagcgtcttttagaatgacggagacgagggtagaggcgaaggagttgagttgataggtggatttggattggaggaagttgagaagttgttgttgt 46497412  T
Q  326 gtggaaccctcagagccggaagcgatgatgct 357  Q
    ||||  ||||| ||||| | ||||||||||||    
T  46497411 gtggggccctcggagccagtagcgatgatgct 46497380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 342
Target Start/End: Original strand, 47414838 - 47415026
Alignment:
Q  154 gaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcgaggcccaccggagggagcagcgtctttgaggatgacggaa 253  Q
    |||||||| || ||||||||||| |||||||||||| |  |||||| | | ||||| || |||||||| ||  |||| ||  || ||||| ||| | |||    
T  47414838 gaaggaaggtttaagagaaagggattgttcaacccataggccattgacaaaagagacgcaaggcccactggcaggagaaggatcattgagtatggctgaa 47414937  T
Q  254 atgaggcgagagatgacggagttgagttgatggatggatttgaagccgaggaagtcgagaagttgttgctgtgtggaaccctcagagcc 342  Q
    | |||  |||||   | ||||||||| ||||  ||||||||  ||||||||||||||||||| | ||| ||||||| ||||||||||||    
T  47414938 aggagatgagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtggtaccctcagagcc 47415026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 46550160 - 46550223
Alignment:
Q  155 aaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcgaggcc 218  Q
    ||||||| ||||||||||||||||||||||| |||| |||||||| ||| |||||||| |||||    
T  46550160 aaggaaggttgaagagaaagggtttgttcaatccacgcaccattgacgaaagagaggcaaggcc 46550223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 4582375 - 4582458
Alignment:
Q  151 ttggaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcgaggcccaccggagggagcagc 234  Q
    ||||||||||| ||| |||||| || |||| ||||||||||| |||||   || |||||||| ||| |||||||||||||||||    
T  4582375 ttggaaggaaggttgcagagaacggctttgatcaacccacactccattaaggaaagagaggcaaggaccaccggagggagcagc 4582458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 20143744 - 20143684
Alignment:
Q  154 gaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcga 214  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| | | | ||||||||||    
T  20143744 gaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagaggcga 20143684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 20169766 - 20169826
Alignment:
Q  154 gaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcga 214  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| | | | ||||||||||    
T  20169766 gaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagaggcga 20169826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 20143645 - 20143578
Alignment:
Q  262 agagatgacggagttgagttgatggatggatttgaagccgaggaagtcgagaagttgttgctgtgtgg 329  Q
    |||| ||| |||||| || |||| | |||||||||||| ||||||||||| ||||||||| |||||||    
T  20143645 agaggtgaaggagttaagatgattggtggatttgaagcggaggaagtcgacaagttgttgttgtgtgg 20143578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 17734750 - 17734673
Alignment:
Q  154 gaaggaagtttgaagagaaagggtttgttcaacccacacaccattggcgacagagaggcgaggcccaccggagggagc 231  Q
    |||||||| |||||||| ||| | |||||||||||||||||||||| ||  ||| |||| ||| ||||||| ||||||    
T  17734750 gaaggaaggttgaagaggaagtgattgttcaacccacacaccattgacgtgagacaggcaaggaccaccggcgggagc 17734673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 16729638 - 16729594
Alignment:
Q  155 aaggaagtttgaagagaaagggtttgttcaacccacacaccattg 199  Q
    ||||||| |||||||| ||| | ||||||||||||||||||||||    
T  16729638 aaggaaggttgaagaggaagtgattgttcaacccacacaccattg 16729594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 17706710 - 17706666
Alignment:
Q  155 aaggaagtttgaagagaaagggtttgttcaacccacacaccattg 199  Q
    ||||||| |||||||| ||| | ||||||||||||||||||||||    
T  17706710 aaggaaggttgaagaggaagtgattgttcaacccacacaccattg 17706666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 17716698 - 17716654
Alignment:
Q  155 aaggaagtttgaagagaaagggtttgttcaacccacacaccattg 199  Q
    ||||||| |||||||| ||| | ||||||||||||||||||||||    
T  17716698 aaggaaggttgaagaggaagtgattgttcaacccacacaccattg 17716654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University