View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11191_low_9 (Length: 316)

Name: NF11191_low_9
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11191_low_9
NF11191_low_9
[»] chr8 (2 HSPs)
chr8 (1-311)||(20232527-20232837)
chr8 (103-137)||(14019786-14019820)
[»] chr7 (6 HSPs)
chr7 (1-311)||(44314434-44314744)
chr7 (103-138)||(27585233-27585268)
chr7 (103-136)||(24240270-24240303)
chr7 (50-87)||(27585295-27585332)
chr7 (47-87)||(14991534-14991574)
chr7 (47-87)||(15421145-15421185)
[»] chr2 (4 HSPs)
chr2 (103-138)||(14280257-14280292)
chr2 (103-137)||(32810968-32811002)
chr2 (103-136)||(11349885-11349918)
chr2 (103-136)||(11350279-11350312)
[»] chr6 (2 HSPs)
chr6 (103-139)||(26842696-26842732)
chr6 (103-136)||(25183982-25184015)
[»] chr1 (6 HSPs)
chr1 (248-306)||(39637523-39637581)
chr1 (248-306)||(39646191-39646249)
chr1 (50-87)||(45443259-45443296)
chr1 (46-87)||(45858694-45858735)
chr1 (103-136)||(51722232-51722265)
chr1 (50-89)||(13356944-13356984)
[»] chr3 (3 HSPs)
chr3 (103-136)||(10450516-10450549)
chr3 (103-136)||(10450740-10450773)
chr3 (103-136)||(15820697-15820730)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 20232527 - 20232837
Alignment:
Q  1 ccctcacgcttcagcccagccccctgaagcgtggacgatgcaagcccgacttgtacggttaggagtgcctcttttttataaactcttattcattaatcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  20232527 ccctcacgcttcagcccagccccctgaagcgtggacgatgcaagcccgacttgtacggttaggagtgcctcccttttataaactcttattcattaatcat 20232626  T
Q  101 aaggactaaatcccacctgagtgttggctgctaacaataagctcgtctgggacgtgtaattatttacagtatttatttgattttacttcattttttgatg 200  Q
    ||||||||||||||||| ||||||| ||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20232627 aaggactaaatcccacccgagtgttagccactaacaataagctcgtctgggatgtgtaattatttacagtatttatttgattttacttcattttttgatg 20232726  T
Q  201 gtctcagaatcaaagttcaatatatctgaactggctttttctttatatcaggtaaaagacgtagtagtggaagttgtggaaggagatgctagaaatgttc 300  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20232727 gtctcagaatcaaagttcaatatatctgaactagctttttctttatatcaggtaaaagacgtagtagtggaagttgtggatggagatgctagaaatgttc 20232826  T
Q  301 tctgtgctgct 311  Q
    |||||| ||||    
T  20232827 tctgtgatgct 20232837  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 14019820 - 14019786
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaacaa 137  Q
    ||||||||||||||| |||||||||||||||||||    
T  14019820 ggactaaatcccacccgagtgttggctgctaacaa 14019786  T

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Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 44314434 - 44314744
Alignment:
Q  1 ccctcacgcttcagcccagccccctgaagcgtggacgatgcaagcccgacttgtacggttaggagtgcctcttttttataaactcttattcattaatcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  44314434 ccctcacgcttcagcccagccccctgaagcgtggacgatgcaagcccgacttgtacggttaggagtgcctcccttttataaactcttattcattaatcat 44314533  T
Q  101 aaggactaaatcccacctgagtgttggctgctaacaataagctcgtctgggacgtgtaattatttacagtatttatttgattttacttcattttttgatg 200  Q
    ||||||||||||||||| ||||||| ||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44314534 aaggactaaatcccacccgagtgttagccactaacaataagctcgtctgggatgtgtaattatttacagtatttatttgattttacttcattttttgatg 44314633  T
Q  201 gtctcagaatcaaagttcaatatatctgaactggctttttctttatatcaggtaaaagacgtagtagtggaagttgtggaaggagatgctagaaatgttc 300  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44314634 gtctcagaatcaaagttcaatatatctgaactagctttttctttatatcaggtaaaagacgtagtagtggaagttgtggatggagatgctagaaatgttc 44314733  T
Q  301 tctgtgctgct 311  Q
    |||||| ||||    
T  44314734 tctgtgatgct 44314744  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 27585268 - 27585233
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaacaat 138  Q
    ||||||||||||||||||||||||||||||||||||    
T  27585268 ggactaaatcccacctgagtgttggctgctaacaat 27585233  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 24240270 - 24240303
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaaca 136  Q
    ||||||||||||||||||| ||||||||||||||    
T  24240270 ggactaaatcccacctgagagttggctgctaaca 24240303  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 27585332 - 27585295
Alignment:
Q  50 cttgtacggttaggagtgcctcttttttataaactctt 87  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  27585332 cttgtacggtgaggagtgcctcctttttataaactctt 27585295  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 14991534 - 14991574
Alignment:
Q  47 cgacttgtacggttaggagtgcctcttttttataaactctt 87  Q
    ||||||||||||| ||||||||||| | |||||||||||||    
T  14991534 cgacttgtacggtgaggagtgcctcctctttataaactctt 14991574  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 15421145 - 15421185
Alignment:
Q  47 cgacttgtacggttaggagtgcctcttttttataaactctt 87  Q
    ||||||||||||| ||||||||||| | |||||||||||||    
T  15421145 cgacttgtacggtgaggagtgcctcctctttataaactctt 15421185  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 14280292 - 14280257
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaacaat 138  Q
    ||||||||||||||||||||||||||||||||||||    
T  14280292 ggactaaatcccacctgagtgttggctgctaacaat 14280257  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 32810968 - 32811002
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaacaa 137  Q
    ||||||||||||||| |||||||||||||||||||    
T  32810968 ggactaaatcccacccgagtgttggctgctaacaa 32811002  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 11349885 - 11349918
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaaca 136  Q
    ||||||||||||||| ||||||||||||||||||    
T  11349885 ggactaaatcccacccgagtgttggctgctaaca 11349918  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 11350279 - 11350312
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaaca 136  Q
    ||||||||||||||| ||||||||||||||||||    
T  11350279 ggactaaatcccacccgagtgttggctgctaaca 11350312  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 26842732 - 26842696
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaacaata 139  Q
    ||||||||||||||| |||||||||||||||||||||    
T  26842732 ggactaaatcccacccgagtgttggctgctaacaata 26842696  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 25184015 - 25183982
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaaca 136  Q
    ||||||||||||||| ||||||||||||||||||    
T  25184015 ggactaaatcccacccgagtgttggctgctaaca 25183982  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 39637581 - 39637523
Alignment:
Q  248 tcaggtaaaagacgtagtagtggaagttgtggaaggagatgctagaaatgttctctgtg 306  Q
    ||||||||| || ||| |||| || || |||||||| ||||||||||||||||||||||    
T  39637581 tcaggtaaatgatgtaatagtagaggtggtggaaggtgatgctagaaatgttctctgtg 39637523  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 39646249 - 39646191
Alignment:
Q  248 tcaggtaaaagacgtagtagtggaagttgtggaaggagatgctagaaatgttctctgtg 306  Q
    ||||||||| || ||| |||| || || |||||||| ||||||||||||||||||||||    
T  39646249 tcaggtaaatgatgtaatagtagaggtggtggaaggtgatgctagaaatgttctctgtg 39646191  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 45443296 - 45443259
Alignment:
Q  50 cttgtacggttaggagtgcctcttttttataaactctt 87  Q
    |||||||||||||||||||||| | |||||||||||||    
T  45443296 cttgtacggttaggagtgcctcatctttataaactctt 45443259  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 45858735 - 45858694
Alignment:
Q  46 ccgacttgtacggttaggagtgcctcttttttataaactctt 87  Q
    |||||||||||||| ||||||||||| | |||||||||||||    
T  45858735 ccgacttgtacggtgaggagtgcctcctctttataaactctt 45858694  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 51722265 - 51722232
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaaca 136  Q
    ||||||||||||||| ||||||||||||||||||    
T  51722265 ggactaaatcccacccgagtgttggctgctaaca 51722232  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 13356944 - 13356984
Alignment:
Q  50 cttgtacggttaggagtgcct-cttttttataaactcttat 89  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  13356944 cttgtaaggttaggagtgcctccttttttataaactcttat 13356984  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 10450516 - 10450549
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaaca 136  Q
    ||||||||||||||| ||||||||||||||||||    
T  10450516 ggactaaatcccacccgagtgttggctgctaaca 10450549  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 10450740 - 10450773
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaaca 136  Q
    ||||||||||||||| ||||||||||||||||||    
T  10450740 ggactaaatcccacccgagtgttggctgctaaca 10450773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 15820697 - 15820730
Alignment:
Q  103 ggactaaatcccacctgagtgttggctgctaaca 136  Q
    ||||||||||||||| ||||||||||||||||||    
T  15820697 ggactaaatcccacccgagtgttggctgctaaca 15820730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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