View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11192_high_15 (Length: 246)
Name: NF11192_high_15
Description: NF11192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11192_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 44710228 - 44709994
Alignment:
| Q |
1 |
cttggtttactactgctacaatctagatcagcctctgttccaatgtcttgtaagctgtatctggttcttaacatggcttgcctacttcacattttagaca |
100 |
Q |
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| T |
44710228 |
cttggtttactactgctacaatctagatcagcctctgttccaatgtcttgtaggctgtatctggttcttaacatggcttgcctacttcacattttagaca |
44710129 |
T |
|
| Q |
101 |
acccgaaaaacgagtaagcgctgctgcaaaactccccggctttgccttgatgtctgacttgggaaaatttgcagccttagttccagactgtttaaagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44710128 |
acccgaaaaacgagtaagcgctgctgcaaaactccctggctttgccttgatgtctgacttgggaaaatttgcagccttagttccagactgtttaaagaag |
44710029 |
T |
|
| Q |
201 |
gctccattcatcatcaagtcattctctgatgtcca |
235 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |
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| T |
44710028 |
gctccattcatcatcaagtcattctctgatctcca |
44709994 |
T |
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