View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11192_high_18 (Length: 224)
Name: NF11192_high_18
Description: NF11192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11192_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 1145371 - 1145182
Alignment:
| Q |
13 |
agagaggaggaagaggcaaaggaaggtcaagtggaaacactcattattatcaccac---aatcacactgctaactctgcttctgcaacaacagtttctgc |
109 |
Q |
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| T |
1145371 |
agagaggaggaagaggcaaaggaaggtcaagtggaaacactcattattatcaccaccacaatcacactgctaactctgcttctgcaacaacagtttctgc |
1145272 |
T |
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| Q |
110 |
aaggactcattttggtgtctcaacattcttcttatgcatgagcttttggctttaatcacattctttcacttccattaattaagtatcatg |
199 |
Q |
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| T |
1145271 |
aaggactcattttggtgtctcaacatttttcttatgcatgagcttttggctttaatcacattatttcacttccattaattaagtatcatg |
1145182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 1137077 - 1137002
Alignment:
| Q |
124 |
gtgtctcaacattcttcttatgcatgagcttttggctttaatcacattctttcacttccattaattaagtatcatg |
199 |
Q |
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| T |
1137077 |
gtgtctcaacatttcttttatgtttgagcttttggctttaattacattgtttcacttccactagtttagtatcatg |
1137002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 1148533 - 1148459
Alignment:
| Q |
89 |
ttctgcaacaacagtttctgcaaggactcattttggtgtctcaacattcttcttatgcatgagcttttggcttta |
163 |
Q |
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| T |
1148533 |
ttctgcaacaacattatctgcagtgcctcatttttgtgtctcaacattgattttatgtatgagcttttggcttta |
1148459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 1133551 - 1133441
Alignment:
| Q |
89 |
ttctgcaacaacagtttctgcaaggactcattttggtgtctcaacattcttcttatgcatgagcttttggctttaatcacattctttcacttccattaat |
188 |
Q |
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| T |
1133551 |
ttctgcagcatcattttatgcagggacttatttttgtttctcaacatttattttatgtgtaatcttttggctttaattaccttgtttcacttccagtagt |
1133452 |
T |
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| Q |
189 |
taagtatcatg |
199 |
Q |
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| T |
1133451 |
taagtatcatg |
1133441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 1181336 - 1181254
Alignment:
| Q |
89 |
ttctgcaacaacagtttctgcaaggactcattttggtgtctcaacattcttcttatgcatgagcttttggctttaatcacatt |
171 |
Q |
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| T |
1181336 |
ttctgcaacaacattatctgcatggcctcatttttgtgtctcaactttgattttgtgtttgagcttttggctttaaacacatt |
1181254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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