View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11192_high_4 (Length: 533)
Name: NF11192_high_4
Description: NF11192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11192_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 4749225 - 4749747
Alignment:
| Q |
1 |
aattatatactcatttattcatctaagtacacaatttgattcacaccttatagttacatttnnnnnnntcctattgtgtttaggcacgaaagaagttggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4749225 |
aattatatactcatttattcatctaagtacacaatttgatttacaccttatagttacatttaaaaaaatcctattgtgtttaggcacgaaagaagttggt |
4749324 |
T |
|
| Q |
101 |
gaagctgttgaaaggcttggtggatcataagaggagaaacaataataatgaaaaacaacagacnnnnnnngatttgatggagttgttgatggaagccaga |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4749325 |
gaagctgttgaaaggtttggtggatcataagaggagaaacaataataatgaaaaacaacagacaaaaaaagatttgatggagttgttgatggaagccaga |
4749424 |
T |
|
| Q |
201 |
gacgacgagggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttatggtgttttgtgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4749425 |
gacgacgagggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttatggtgttttgtgga |
4749524 |
T |
|
| Q |
301 |
ccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggttttaatactattaattaatgtggcattttcaaaatttgttactg-nnnnnn |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4749525 |
ccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggttttaatactattaattaatgtggcattttcaaaatttgttactgttttttt |
4749624 |
T |
|
| Q |
400 |
nnnnaacaaacaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaattagg |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4749625 |
ttttaacaaacaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggacttacacatacggaaattagg |
4749724 |
T |
|
| Q |
500 |
caaatgaaatatctttcacaggt |
522 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
4749725 |
caaatgaaatatctttctcaggt |
4749747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 75 - 349
Target Start/End: Original strand, 4757783 - 4758054
Alignment:
| Q |
75 |
tgtgtttaggcacgaaagaagttggtgaagctgttgaaaggcttggtggatcataagaggagaaacaataataatgaaaaacaacagacnnnnnnngatt |
174 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| ||| ||| |||||||||||| || ||||| || |||||||| | |||| | || ||| |
|
|
| T |
4757783 |
tgtgtttaggcaagaaagaagttgatgaagctattgcaagccttggtggatcaaaaaaggaggaataataataaagtaaaaaa---gatgaaaaaagata |
4757879 |
T |
|
| Q |
175 |
tgatggagttgttgatggaagccagagacgacgagggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatga |
274 |
Q |
| |
|
||||||| || |||||||||| || ||| || |||||| || |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4757880 |
tgatggatttattgatggaagtcaaagatgaagagggtaggatgttggaggatgaagacattatagacttgcttcttgtgttcttgttagctggtcatga |
4757979 |
T |
|
| Q |
275 |
aagctctgcttatggtgttttgtggaccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggt |
349 |
Q |
| |
|
|||||||||| |||| |||||||||| |||| |||||| | ||||||||||||||||| |||| |||||||| |
|
|
| T |
4757980 |
aagctctgctcatggaattttgtggactattatttacctcattgatcatccacatgtcttccaaagggccaaggt |
4758054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 522
Target Start/End: Original strand, 4758195 - 4758293
Alignment:
| Q |
424 |
ctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaattaggcaaatgaaatatctttcacaggt |
522 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||| |||||||||| | | | || |||||||| ||||||| ||||||||||| |||| |
|
|
| T |
4758195 |
ctttcagaaagaacaagaagagatcatggaaacaaggccttccactcaaaaaggactgaaccttaaggaaattaagcaaatgcaatatctttcaaaggt |
4758293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University