View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11192_high_5 (Length: 507)
Name: NF11192_high_5
Description: NF11192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11192_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 254 - 490
Target Start/End: Complemental strand, 46873464 - 46873228
Alignment:
| Q |
254 |
ctttattttcaaattcatagttctttaacaacccaagaaataaaaaatgcaacattcatactagttctttaacaaatcaagaaactttttcagataaatt |
353 |
Q |
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| T |
46873464 |
ctttattttcaaattcatagttctttaacaacccaagaaataaaaaatgcaacattcatactagttctttaacaaatcaagaaactttttcagataaatt |
46873365 |
T |
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| Q |
354 |
ctacaaacaatacagtacctggttgattttccatgatttatcaataaagctacagttagaaacttttccattcacaatccctcccaattccttctgcaaa |
453 |
Q |
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| T |
46873364 |
ctacaaacaatacagtacctggttgattttccatgatttatcaataaagctacagttagaaacttttccattcacaatccctcccaattccttctgcaaa |
46873265 |
T |
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| Q |
454 |
aacttcaactttccattcaaatcttgaactttatgac |
490 |
Q |
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| T |
46873264 |
aacttcaactttccattcaaatcttgaactttatgac |
46873228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 46873717 - 46873491
Alignment:
| Q |
1 |
taaaaagggaaaacattttggagaatttacctcagtaactcttcctgataagatagttactgtacgaatagacatcccagtggtgatcattccagctgtt |
100 |
Q |
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| T |
46873717 |
taaaaagggaaaacattttggagaatttacctcagtaactcttcctgataagatagttactgtacgaatagacatcccagtggtgatcattccagctgtt |
46873618 |
T |
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| Q |
101 |
tgtagaggccacccccaaattgatacctcctcaattgctgttttgtacaatttgcaccttgaattcaataatagaccatcctatatacaattttagttga |
200 |
Q |
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| T |
46873617 |
tgtagaggccacccccaaattgatacctcctcaattgctgttttgtacaatttgcaccttgaattcaataatagaccatcctatatacaattttagttga |
46873518 |
T |
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| Q |
201 |
tgtttcagctatacttatttattgagc |
227 |
Q |
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| T |
46873517 |
tgtttcagctatacttatttattgagc |
46873491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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