View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11192_high_6 (Length: 481)
Name: NF11192_high_6
Description: NF11192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11192_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Complemental strand, 2928137 - 2927679
Alignment:
| Q |
17 |
aaatacaaataacgacacaacagagagaaataaaagagggccgaagaatggaatcgaacagtagctaaattgttgtgatccgaaccatggtttaaggaac |
116 |
Q |
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| T |
2928137 |
aaatacaaataacgacacagcagagagaaataaaagagggctgaagaatggaatcgaatagtagctaaattgttgtgatccgaaccatggtttaaggaac |
2928038 |
T |
|
| Q |
117 |
ccggcgagttctctccatctcactacagccaactctgttgattaagaaagagaagtctaaccatctacaagtgacttaggatacaatttgctgtttaagg |
216 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2928037 |
ccggcgagttcactccatctgactacagccaactctgttgattaagaaagagaagtctaaccatctacaagtgacttaggatacaattttctgtttaagg |
2927938 |
T |
|
| Q |
217 |
cgactagaggttatgttgttgactcgtaatgtgctccttttgtgaggactggttagtggcaattgtataacagaagggaacttcttttcccacccgaaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2927937 |
cgactagaggttatgttgttgactcgtaatgtgctccttttgtgaggactggttagtggcaattgtataacagaagggaacttcttttcccacccgaaag |
2927838 |
T |
|
| Q |
317 |
tatatttttggacacatgtgtgatttttcagaaacgtagggcggaaaaagaagtctcataacaaaattaggtttcnnnnnnngggcgcagattctaattg |
416 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||| |
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| T |
2927837 |
tatatttttggacacatgtgtgatttttaagaaacgtagggcggaaaaagaagtctcataaccaaataaggtttctttttttgggcgcggattctaattg |
2927738 |
T |
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| Q |
417 |
aatccc-ttttccccgatggcaacagatactcattcggacactgcttctgcctatgcta |
474 |
Q |
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|||||| ||||||||||||||||||||||||| ||| ||||||||||||| || ||||| |
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| T |
2927737 |
aatccctttttccccgatggcaacagatactcgttctgacactgcttctgtctgtgcta |
2927679 |
T |
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