View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11192_high_8 (Length: 363)
Name: NF11192_high_8
Description: NF11192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11192_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 4749412 - 4749747
Alignment:
| Q |
18 |
gatggaagccagagacgacgagggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttat |
117 |
Q |
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| T |
4749412 |
gatggaagccagagacgacgagggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttat |
4749511 |
T |
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| Q |
118 |
ggtgttttgtggaccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggttttaatactattaattaatgtggcattttcaaaatttg |
217 |
Q |
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| T |
4749512 |
ggtgttttgtggaccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggttttaatactattaattaatgtggcattttcaaaatttg |
4749611 |
T |
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| Q |
218 |
ttactg-nnnnnnnnnnaacaaacaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacaca |
316 |
Q |
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| T |
4749612 |
ttactgtttttttttttaacaaacaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggacttacaca |
4749711 |
T |
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| Q |
317 |
tacggaaattaggcaaatgaaatatctttcacaggt |
352 |
Q |
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| T |
4749712 |
tacggaaattaggcaaatgaaatatctttctcaggt |
4749747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 4757893 - 4758054
Alignment:
| Q |
18 |
gatggaagccagagacgacgagggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttat |
117 |
Q |
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| T |
4757893 |
gatggaagtcaaagatgaagagggtaggatgttggaggatgaagacattatagacttgcttcttgtgttcttgttagctggtcatgaaagctctgctcat |
4757992 |
T |
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| Q |
118 |
ggtgttttgtggaccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggt |
179 |
Q |
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| T |
4757993 |
ggaattttgtggactattatttacctcattgatcatccacatgtcttccaaagggccaaggt |
4758054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 4758195 - 4758293
Alignment:
| Q |
254 |
ctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaattaggcaaatgaaatatctttcacaggt |
352 |
Q |
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| T |
4758195 |
ctttcagaaagaacaagaagagatcatggaaacaaggccttccactcaaaaaggactgaaccttaaggaaattaagcaaatgcaatatctttcaaaggt |
4758293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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