View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11192_low_16 (Length: 232)
Name: NF11192_low_16
Description: NF11192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11192_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 2420669 - 2420465
Alignment:
| Q |
12 |
gtgagatgaaatttggacccaatttgagaagtggatgccaaagtagaacatggatatcacagaatctaccactccaaaagtaacaccacaaggttcaaca |
111 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2420669 |
gtgagaagaaatttggacccaatttgagaagtggatgccaaagtagaacatggatatcacagaatctaccactccaaaagtaacaccacaaggttcaaca |
2420570 |
T |
|
| Q |
112 |
atcaatttcctcggttctaataatgatggaagtaaaaatattggttaagttttattag---nnnnnnnnggtaagagatagattaaagatttcatgaact |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
2420569 |
atcaatttcctcggttctaataatgatggaagtaaaaatattggttaagttttattaggaaaaaaataaggtaagagatagatcaaagatttcatgaact |
2420470 |
T |
|
| Q |
209 |
aaggt |
213 |
Q |
| |
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||||| |
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| T |
2420469 |
aaggt |
2420465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 31872107 - 31872309
Alignment:
| Q |
12 |
gtgagatgaaatttggacccaatttgagaagtggatgccaaagtagaacatggatatcacagaatctaccactccaaaagtaacaccacaaggttcaaca |
111 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31872107 |
gtgagaagaaatttggaccgaatttgagaagtggatgccaaagtagaacatggat--cacagaatctaccactccaaaagtaacaccacaaggttcaaca |
31872204 |
T |
|
| Q |
112 |
atcaatttcctcggttctaataatgatggaagtaaaaatattggttaagttttattag---nnnnnnnnggtaagagatagattaaagatttcatgaact |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
31872205 |
atcaatttcctcggttctaataatgatggaagtaaaaatattggttaagttttattagaaaaaaaaaaaggtaagagatagatcaaagatttcatgaact |
31872304 |
T |
|
| Q |
209 |
aaggt |
213 |
Q |
| |
|
||||| |
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| T |
31872305 |
aaggt |
31872309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 22168524 - 22168726
Alignment:
| Q |
12 |
gtgagatgaaatttggacccaatttgagaagtggatgccaaagtagaacatggatatcacagaatctaccactccaaaagtaacaccacaaggttcaaca |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
22168524 |
gtgagaagaaatttggacccaatttgagaagtggatgccaaagtagaacatagatatcacagaatctaccactccaaaagtaataccacaaggtttaaca |
22168623 |
T |
|
| Q |
112 |
atcaatttcctcggttctaataatgatggaagtaaaaatattggttaag-ttttattagnnnnnnnnggtaagagatagattaaagatttcatgaactaa |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
22168624 |
atcaatttcctcggttctaataatgatggaagtacaaatattggttaagtttttattagaaaaaaaaggtaagagatagatcaaagatttcatgaactaa |
22168723 |
T |
|
| Q |
211 |
ggt |
213 |
Q |
| |
|
||| |
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|
| T |
22168724 |
ggt |
22168726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 2166892 - 2166735
Alignment:
| Q |
12 |
gtgagatgaaatttggacccaatttgagaagtggatgccaaagtagaacatggatatcacagaatctaccactccaaaagtaacaccacaaggttcaaca |
111 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2166892 |
gtgagaagaaatttggaccaaatttgagaagtggatgccaaagtagaacatggatatcacagaatctaccactccaaaagtaacaccacaaggttcaaca |
2166793 |
T |
|
| Q |
112 |
atcaatttcctcggttctaataatgatggaagtaaaaatattggttaagttttattag |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2166792 |
atcaatttcctcggttctaataatgatggaagtaaaaatattagttaagttttattag |
2166735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 24712144 - 24712058
Alignment:
| Q |
24 |
ttggacccaatttgagaagtggatgccaaagtagaacatggatatcacagaatctaccactccaaaagtaacaccacaaggttcaacaatca |
115 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||| |||| ||| |||||||| || || |||||||||||||| ||||||||||| |
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| T |
24712144 |
ttggacccaaattgagaagtgga-----aagtagaacatgaatatttcagcatctaccattctaagagtaacaccacaagattcaacaatca |
24712058 |
T |
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