View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11192_low_17 (Length: 231)
Name: NF11192_low_17
Description: NF11192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11192_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 35850309 - 35850501
Alignment:
| Q |
19 |
cataggggagtaccaaggaaatatgggttaatcaaaacaaacacgtatgtatgtgtgtattacttgatgtcctgtttttaatgaaatagggttcaaagct |
118 |
Q |
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| T |
35850309 |
cataggggagtaccaaggaaatatgggttaatcaaaacacacacgtatgtatgtgtgtattacttgatgtcctgtttttaatggaatagggttcaaagct |
35850408 |
T |
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| Q |
119 |
ctaatgcaaacaaaacagtcaacagtatataaataaaaaattaacctaagtaggtagaagcataatacctaaggcatctcgatgcaatcttcg |
211 |
Q |
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| T |
35850409 |
ctaatgcaaacaaaacagtcaacagtatataaataaaaaattaacctaagtaggtagaagcataataccttaggcatctcgatgcaatcttcg |
35850501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 35840766 - 35840868
Alignment:
| Q |
90 |
ctgtttttaatgaaatagggttcaaagctctaatgcaaacaaaacagtcaacagtatataaataaaaaattaacctaagtaggtagaagcataataccta |
189 |
Q |
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| T |
35840766 |
ctgtttttaatggaatagagtttagagctctaatgtacacaaaacagtcaacaatat---aatcataaattaacctgaggaggaagaagcataataccta |
35840862 |
T |
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| Q |
190 |
aggcat |
195 |
Q |
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|||||| |
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| T |
35840863 |
aggcat |
35840868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 44384786 - 44384843
Alignment:
| Q |
19 |
cataggggagtaccaaggaaatatgggttaatcaaaacaaacacgtatgtatgtgtgt |
76 |
Q |
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| T |
44384786 |
cataggggagtaccaagagaatatgggttgatcaaaacacacacgtatgtatgtgtgt |
44384843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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