View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11192_low_2 (Length: 562)
Name: NF11192_low_2
Description: NF11192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11192_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 552
Target Start/End: Original strand, 14671528 - 14672069
Alignment:
| Q |
19 |
aaatattagtatacgtgccggtgtaatgtgggtggaaataggacatccaacctctttcactccatttcttaccactccacatttcagctctatttactat |
118 |
Q |
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| T |
14671528 |
aaatattagtatacgtgccggtgtcatgtgggtggaaataggacatccaacctctttcactccatttcttaccactccacatttcagcactatttactat |
14671627 |
T |
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| Q |
119 |
cgcaatttggaatcttatcttacgcttagtgcattcgctgatacactataaacaccaagttttcagacatattgtgaagaaaacacatttgaaactgaag |
218 |
Q |
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| T |
14671628 |
cgcaatttggaatcttatcttacgcttagtgcatttgctgatacactataaacaccaagttttcagacatattgtcaagaaaacacatttgaaactgaag |
14671727 |
T |
|
| Q |
219 |
tttctaaacatactagtaactgtacatacgaaaatatggtatttgtgcagttggaaaaatagagttccttgaaaggtctggctaaaagatgtgtattttt |
318 |
Q |
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| T |
14671728 |
tttctaaacatactagtaaccgtacatacgaaaatatggtatttgtgcagttggaaaaatagagttccttgaaaggtctggctaaaagatgtgtatttta |
14671827 |
T |
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| Q |
319 |
actagtaatatactcaaaagtgaattttcaaatgctttaaatagtacatccataaatttcacgtttttagatgcatattcttgagttccctgtgagtaga |
418 |
Q |
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| T |
14671828 |
actagt-atatactcaaaagtgaattttcaaatgctttaaatagtacatccataaatttcacgtttttagatgcatattcttgagttccctgtgagtaga |
14671926 |
T |
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| Q |
419 |
tcacaaactgtgatt--agat-------gcataatacttgacgagtaaagtctaaacaagaattgttccacttccacctatacatcaaacttgtattctc |
509 |
Q |
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||||||| ||||||| | || || | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14671927 |
tcacaaattgtgattgcaaataacgtcgacacacaaaaggatgagtaaagtctaaacaagaattgttccacttccacctatacatcaaacttgtattctc |
14672026 |
T |
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| Q |
510 |
ccaattaattgcttaaccgcataatttactttatccacctatg |
552 |
Q |
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| T |
14672027 |
ccaattaattgcttaaccgcataatttactttatccacctatg |
14672069 |
T |
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