View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11192_low_3 (Length: 553)
Name: NF11192_low_3
Description: NF11192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11192_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 496
Target Start/End: Complemental strand, 4328778 - 4328296
Alignment:
| Q |
17 |
tgccagggtggtgtaattataatgggccattttggtccctatctctttcattttccttgaatccttaaccccccaaatatgttagtttcttctttctccg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4328778 |
tgccagggtggtgtaattataatgggccattttggtccctatctctttcattttccttgaatccttaaccccccaaatatgttagtttcttctttctccg |
4328679 |
T |
|
| Q |
117 |
tcagtttttgtggnnnnnnnaggtacttttatggacagttacatagattaatctatttatatatttagaacacacttaaactctcaactgataaaattgt |
216 |
Q |
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| T |
4328678 |
tcagtttttgtggtttttttaggtacttttatggacagttacatagattaatctatttatatatttagaacacacttaaactctcaactgataaaattgt |
4328579 |
T |
|
| Q |
217 |
gtacactaaagttagagatcaaacctc--tgtttaagagacttgctactcctcactcgaatcaaaccacatcagtttgatagcctaaccaagaataattt |
314 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4328578 |
gtacactaaagttagagatcaaacctctatgtttaagagacttgctactcctcactcgaatcaaaccacatcagtttgatagcctaaccaagaataattt |
4328479 |
T |
|
| Q |
315 |
aaagttacataattgaacaa-nnnnnnnngaataagctaaataacataattgaacaattacatgaagttcctcttccataacttaacctttatctactca |
413 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4328478 |
aaagttacataattgaacaatttttttttgaataagctaaataacataattgaacaattacatgaagttcctcttccataacttaacctttatctactca |
4328379 |
T |
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| Q |
414 |
tgatgtataaacacatattaatacaaacataagaaaagaatcaccggtggatgcttcctttcctccagaagtgcttcgatcac |
496 |
Q |
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| T |
4328378 |
tgatgtataaacatatattaatacaaacataagaaaagaatcactagtggatgcttcctttgctccagaagtgcttcgatcac |
4328296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 4332144 - 4332044
Alignment:
| Q |
17 |
tgccagggtggtgtaattata--atgggccattttggtccctatc-tctttcattttccttgaatccttaaccccccaaatatgttagtttcttctttct |
113 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| || ||||||||||||| ||||||||| ||||||||||||| |
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| T |
4332144 |
tgccagggtggtgtaattatatgatggcccattttggtccctatcatctttcattttctttaaatccttaacccctcaaatatgtcggtttcttctttct |
4332045 |
T |
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| Q |
114 |
c |
114 |
Q |
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| T |
4332044 |
c |
4332044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 466
Target Start/End: Original strand, 30041255 - 30041285
Alignment:
| Q |
436 |
acaaacataagaaaagaatcaccggtggatg |
466 |
Q |
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| T |
30041255 |
acaaacataagaaaagaatcaccggtggatg |
30041285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 30041209 - 30041245
Alignment:
| Q |
402 |
tttatctactcatgatgtataaacacatattaataca |
438 |
Q |
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|||| ||||||||| |||||||||||||||||||||| |
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| T |
30041209 |
tttagctactcatgttgtataaacacatattaataca |
30041245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 24131738 - 24131702
Alignment:
| Q |
402 |
tttatctactcatgatgtataaacacatattaataca |
438 |
Q |
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|||| |||||||||||||||||||||| ||||||||| |
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| T |
24131738 |
tttacctactcatgatgtataaacacacattaataca |
24131702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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