View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11192_low_7 (Length: 399)
Name: NF11192_low_7
Description: NF11192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11192_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 9738302 - 9738674
Alignment:
| Q |
18 |
cataatccttacacatataaatcccctctaaactctctaatttttcatcattcaaatagatactaagtactaatctataagacactattcacaaactatg |
117 |
Q |
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| T |
9738302 |
cataatccttacacatataaatcccctctaaactctctaatttttcatcattcaaataaatactaagtactaatctataagacactattcacaaactatg |
9738401 |
T |
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| Q |
118 |
tcttataaggttaatgttgcatttttcctatgtctcaatattattttcttcactatggtgaattgcaactatgtacctgaaatcccagtcccaatcccag |
217 |
Q |
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| T |
9738402 |
tcttataaggttaatgttgcatttttcctatgtctcaatattattttcttcactatggtgaattgcaactatgtacctgaaatcccagtcccaatcccag |
9738501 |
T |
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| Q |
218 |
acccaatatataacccttctccaaagggtacatgtcctatagatgcacttaagttaggtgtgtgtgcaaatttgttgaacttggtcaaagttaaattggg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9738502 |
acccaatatataacccttctccaaagggtacatgtcctatagatgcacttaagttaggtgtgtgtgcaaatttgttgaacttggtcaaagttaaattggg |
9738601 |
T |
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| Q |
318 |
gtccccaccaacactcccttgttgctcactcattcaaggtcttgctgatcttgaagctgctgcttgcctttgc |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9738602 |
gtccccaccaacactcccttgttgctcactcattcaaggtcttgctgatcttgaagctgctgcttgcctttgc |
9738674 |
T |
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