View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11192_low_9 (Length: 307)

Name: NF11192_low_9
Description: NF11192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11192_low_9
NF11192_low_9
[»] chr1 (6 HSPs)
chr1 (104-185)||(33884273-33884354)
chr1 (104-185)||(33959898-33959979)
chr1 (19-62)||(33883990-33884036)
chr1 (19-62)||(33960218-33960264)
chr1 (76-108)||(33884052-33884084)
chr1 (76-108)||(33960168-33960200)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 33884273 - 33884354
Alignment:
Q  104 atattagtgatgtttttcaggcagagttaacaggagctacgaaggcttttgaaattacttgtgatttagcattgaccaaata 185  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33884273 atattggtgatgtttttcaggcagagttaacaggagctacgaaggcttttgaaattacttgtgatttagcattgaccaaata 33884354  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 33959979 - 33959898
Alignment:
Q  104 atattagtgatgtttttcaggcagagttaacaggagctacgaaggcttttgaaattacttgtgatttagcattgaccaaata 185  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33959979 atattggtgatgtttttcaggcagagttaacaggagctacgaaggcttttgaaattacttgtgatttagcattgaccaaata 33959898  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 33883990 - 33884036
Alignment:
Q  19 acttgcttgtagtggtgttttcagat---agagtgcatccattttag 62  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  33883990 acttgcttgtagtggtgttttcagatataagagtgcatccattttag 33884036  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 33960264 - 33960218
Alignment:
Q  19 acttgcttgtagtggtgttttcagat---agagtgcatccattttag 62  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  33960264 acttgcttgtagtggtgttttcagatataagagtgcatccattttag 33960218  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 33884052 - 33884084
Alignment:
Q  76 acaacaggttatttttcttaaaacattgatatt 108  Q
    ||||||||||||||||||||||||||| |||||    
T  33884052 acaacaggttatttttcttaaaacattaatatt 33884084  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 33960200 - 33960168
Alignment:
Q  76 acaacaggttatttttcttaaaacattgatatt 108  Q
    ||||||||||||||||||||||||||| |||||    
T  33960200 acaacaggttatttttcttaaaacattaatatt 33960168  T

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