View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11193_high_14 (Length: 260)
Name: NF11193_high_14
Description: NF11193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11193_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36939692 - 36939450
Alignment:
| Q |
1 |
tcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagcccccaaacccactc |
100 |
Q |
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| T |
36939692 |
tcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagcccccaaacccactc |
36939593 |
T |
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| Q |
101 |
cacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactatacacgtctgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939592 |
cacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactatacacgtctgtt |
36939493 |
T |
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| Q |
201 |
tctttactagctcttcctgtggtagcacattcaggagccatgt |
243 |
Q |
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| T |
36939492 |
tctttactagctcttcctgtggtagcacattcaggagccatgt |
36939450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 36941432 - 36941668
Alignment:
| Q |
1 |
tcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagcccccaaacccactc |
100 |
Q |
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|||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||| || |
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| T |
36941432 |
tcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagcccccaaacccattc |
36941531 |
T |
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| Q |
101 |
cacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactatacacgtctgtt |
200 |
Q |
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| T |
36941532 |
cacaatgtttatttcattttcttgagcatta------attattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtt |
36941625 |
T |
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| Q |
201 |
tctttactagctcttcctgtggtagcacattcaggagccatgt |
243 |
Q |
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| T |
36941626 |
tctttactggcccttcctgtggtagcacattcaggagccatgt |
36941668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 3054432 - 3054491
Alignment:
| Q |
159 |
gctatctctaaagcaacaataccaaaactatacacgtctgtttctttactagctcttcct |
218 |
Q |
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|||| ||| ||||||||||| ||||||||||||| ||| | |||||||||||| |||||| |
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| T |
3054432 |
gctagctccaaagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
3054491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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