View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11193_high_9 (Length: 344)
Name: NF11193_high_9
Description: NF11193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11193_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 27841525 - 27841645
Alignment:
| Q |
84 |
tttgaacatggaaatggagacggtgcaacaattatttgaccaatttccatatgaaaatgc-agtaatcccgttctttattcacatcccttttcattctac |
182 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
27841525 |
tttgaacatggaaagggagacggtgcaacaattatttgaccaatttccatatgaaaatgctagtaatcccattctttattcacatcccttttcattcttc |
27841624 |
T |
|
| Q |
183 |
aactcaattgttttgacaaaa |
203 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
27841625 |
aattcaattgttttgacaaaa |
27841645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 48189365 - 48189250
Alignment:
| Q |
84 |
tttgaacatggaaatggagacggtgcaacaattatttgaccaatttccatatgaaaatgc-agtaatcccgttctttattcacatcccttttcattctac |
182 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||| | |
|
|
| T |
48189365 |
tttgaacatggaaagggaaacggtgccacaattatttgaccaatttccataagaaaatgctagtaat-ccgttctttgttcacatcccttttcattcttc |
48189267 |
T |
|
| Q |
183 |
aactcaattgttttgac |
199 |
Q |
| |
|
|| | |||||||||||| |
|
|
| T |
48189266 |
aatttaattgttttgac |
48189250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 39434647 - 39434585
Alignment:
| Q |
219 |
ctaattaaattactcaattaatccc-attctacattcaaaattgaaaaccaataaatcgaaag |
280 |
Q |
| |
|
||||||||| || |||||||| ||| |||| ||||||||||| ||||||||| |||||||||| |
|
|
| T |
39434647 |
ctaattaaactaatcaattaacccccattccacattcaaaatcgaaaaccaagaaatcgaaag |
39434585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 39434681 - 39434640
Alignment:
| Q |
29 |
caccactccacttttcaaaccaaattcaaactcactaattaa |
70 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | |||||||| |
|
|
| T |
39434681 |
caccactccatttttcaaaccaaattcaaacccgctaattaa |
39434640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 2741138 - 2741070
Alignment:
| Q |
84 |
tttgaacatggaaatggagacggtgcaacaattatttgaccaatttccatatgaaaatgc-agtaatcc |
151 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
2741138 |
tttgaacatggaaagggatacggtgcaacaattatttgaccaatttccatatgaatatgctagtaatcc |
2741070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 38155058 - 38155117
Alignment:
| Q |
84 |
tttgaacatggaaatggagacggtgcaacaattatttgaccaatttccatatgaaaatgc |
143 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| |||| ||||||| |||||| ||||||| |
|
|
| T |
38155058 |
tttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgc |
38155117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University