View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11193_low_10 (Length: 341)
Name: NF11193_low_10
Description: NF11193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11193_low_10 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 36939998 - 36939672
Alignment:
| Q |
16 |
gacatcaaaggttgattgtgaggtccttgttaggttattttcaaaagcaagagtcttagaggatacggaatagcaagatgagtttgaagttgaactaaag |
115 |
Q |
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| T |
36939998 |
gacatcaaaggttgattgtgaggtccttgtttggttattttcaaaagcaagagtcttagaggatacggaatagcaagatgagtttgaagttgaactaaag |
36939899 |
T |
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| Q |
116 |
ctttttatattct-ggttttgactttcctctgaattatttgtgctgaatggagctgaaaaagagtttaaaggcccctcaagatatgttggtacaggcata |
214 |
Q |
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| T |
36939898 |
ctttttatattcttggttttgactttcctctgaattatttgtgctgaatggagctgaaaaagagtttaaaggcccctcaagatatgttggtacaggcata |
36939799 |
T |
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| Q |
215 |
cttgatgaaagattaggaagtggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattaggagcaggatgagcacaccaaagac |
314 |
Q |
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| T |
36939798 |
cttgatgaaagattaggaagtggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattaggatcaggatgagcacaccaaagac |
36939699 |
T |
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| Q |
315 |
caacaatcatcatgcacttgctttgtt |
341 |
Q |
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| T |
36939698 |
caacaatcatcatgcacttgatttgtt |
36939672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 91 - 341
Target Start/End: Original strand, 36941202 - 36941452
Alignment:
| Q |
91 |
agatgagtttgaagttgaactaaagctttttatattctggttttgactttcctctgaattatttgtgctgaatggagctgaaaaagagtttaaaggcccc |
190 |
Q |
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| T |
36941202 |
agatgagtttgtatttgaactaaagctttctatattcatgtttggaccttcctctgaaccatttgtgttgaatggagcagtgaatgaattcaaagggcca |
36941301 |
T |
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| Q |
191 |
tcaagatatgttggtacaggcatacttgatgaaagattaggaagtggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattag |
290 |
Q |
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| T |
36941302 |
tcaagatatgttggtacaggcatacttgatggaagattaggcaatggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattag |
36941401 |
T |
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| Q |
291 |
gagcaggatgagcacaccaaagaccaacaatcatcatgcacttgctttgtt |
341 |
Q |
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| T |
36941402 |
gatcaggatgagcacaccaaagaccaacaatcatcatgcacttgatttgtt |
36941452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 36946652 - 36946587
Alignment:
| Q |
182 |
aaaggcccctcaagatatgttggtacaggcatacttgatgaaagattaggaagtggaacttcaaaa |
247 |
Q |
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| T |
36946652 |
aaagggccctcaaggtatgttggtccaggcatacttgatgaaagattaggcagtggagcttcaaaa |
36946587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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