View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11193_low_11 (Length: 330)
Name: NF11193_low_11
Description: NF11193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11193_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 45179562 - 45179257
Alignment:
| Q |
11 |
cacagacgaggttggcaacatgcctttgaaacattttctctgatattgtgagtcaaatgcattgagtattgcaatttcactttatgtaattactgagttc |
110 |
Q |
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| T |
45179562 |
cacagaagaggttggcaacatgcctttgaaacattttctctgatattgtgagtcaaatgcattgagtattgcaatttcactttatgtaattaccgagttc |
45179463 |
T |
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| Q |
111 |
atatttccaagaatgaaaataacgatattgaaatgctgactggatcaaatcttcagag--acctccagggtataatgtgacagatgctaaaacgtcaggc |
208 |
Q |
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| T |
45179462 |
atatttccaagaatgaaaataacgatattgaaatgctgactggatcaaatcttcagagacacctccagggtataatgtgacagatgctaaaacgtcaggc |
45179363 |
T |
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| Q |
209 |
gtgcaaattaaatggactctcgaagccaaactacattccacacagcttattgaagagtgccagcattagtgcttcaaagagtatagaagtgaaaagaagt |
308 |
Q |
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| T |
45179362 |
gtgcaaattaaatggactctcgaagccaaactacattccacacagcttattgaagagtgccagctaatgtgcttcaaagagtatagaagtgaaaagaagt |
45179263 |
T |
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| Q |
309 |
aaagat |
314 |
Q |
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|||||| |
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| T |
45179262 |
aaagat |
45179257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 122 - 314
Target Start/End: Complemental strand, 45172630 - 45172442
Alignment:
| Q |
122 |
aatgaaaataacgatattgaaatgctgactggatcaaatcttcagagacctccagggtataatgtgacagatgctaaaacgtcaggcgtgcaaattaaat |
221 |
Q |
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| T |
45172630 |
aatgaaaacaacgatattgaaatgccaactggatcagatcttcagagccctccaggttctaatgtgacagatgctgaaaactcaggcgctca----aaat |
45172535 |
T |
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| Q |
222 |
ggactctcgaagccaaactacattccacacagcttattgaagagtgccagcattagtgcttcaaagagtatagaagtgaaaagaagtaaagat |
314 |
Q |
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| T |
45172534 |
ggactcgcaaagccaaactacagtccacgtagcttgttgaagagtgccagcattagtgcttcaaagtgtatagatgtgaaaggaagtaaagat |
45172442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 29958484 - 29958428
Alignment:
| Q |
258 |
ttgaagagtgccagcattagtgcttcaaagagtatagaagtgaaaagaagtaaagat |
314 |
Q |
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|||||||||||||||||||||| |||||| ||||||| || |||| |||||||||| |
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| T |
29958484 |
ttgaagagtgccagcattagtggttcaaaatgtatagatgtcaaaaaaagtaaagat |
29958428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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