View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11193_low_15 (Length: 229)
Name: NF11193_low_15
Description: NF11193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11193_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 40186237 - 40186028
Alignment:
| Q |
1 |
tatagcagagatgggagaaggtagaccaaagaagaaaaacgacgagaagtcttaagaaaccttcaagacctggccatcgaaggaacccccaactctgaca |
100 |
Q |
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| T |
40186237 |
tatagcagagatgggagaaggtagaccaaagaagaaaaacgacgagaagtcttaagaaaccttcaagacctggccatcgaaggaacccccaactctgaca |
40186138 |
T |
|
| Q |
101 |
tggcatccatcgtgatgaaggataagtaatcaaaaaattgtacatcgcagatggcctcaagaagctcattactcaaaactcaaacttaactaattatgga |
200 |
Q |
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| T |
40186137 |
tggcatccatcgtgatgaaggataagtaatcaaaaaattgtacatcgcagatggcctcaagaagctcattactcaaaactcaaacttaactaattatgga |
40186038 |
T |
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| Q |
201 |
tgggataaag |
210 |
Q |
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|||||||||| |
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| T |
40186037 |
tgggataaag |
40186028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 40187484 - 40187305
Alignment:
| Q |
12 |
tgggagaaggtagaccaaagaagaaaaacgacgagaagtcttaagaaaccttcaagacctggccatcgaaggaacccccaactctgacatggcatccatc |
111 |
Q |
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||||||||||||||||||||||| ||||| || ||||||||| |||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40187484 |
tgggagaaggtagaccaaagaaggaaaaccacaagaagtcttgagaattcgtgaagacctggccatcgaaggaacccccaactctgacatggcatccatc |
40187385 |
T |
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| Q |
112 |
gtgatgaaggataagtaatcaaaaaattgtacatcgcagatggcctcaagaagctcattactcaaaactcaaacttaact |
191 |
Q |
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|||| ||||||| |||| | ||| |||||| | ||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
40187384 |
gtgactaaggatatgtaaatacaaagttgtacgttgcagacggcctcacaaagctcattactcaaaactcaaacttaact |
40187305 |
T |
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