View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11193_low_5 (Length: 415)
Name: NF11193_low_5
Description: NF11193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11193_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 139 - 399
Target Start/End: Complemental strand, 54084782 - 54084498
Alignment:
| Q |
139 |
ccaccaccgcgacttctaccaccggatcccgaaccagcccgagagcctgcatatgagcctgcctccgaccctgccccagaaccggaaccggaactagaag |
238 |
Q |
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| T |
54084782 |
ccaccactgcgacttctaccacctgatcccgaaccagcccgagagcctgcatatgagcctgcctccgaccctgccccagaaccggaaccggaactagaag |
54084683 |
T |
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| Q |
239 |
atgaagatgatgatgaacttgagga------agaactagaaccagagccag------------------agccagctcctgctccggctccagagccact |
314 |
Q |
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| T |
54084682 |
atgaagatgatgatgaacttgaggaagaactagaaccagagccagagccagctcctgctccggctccagagccagctcctgctccggctccagagccact |
54084583 |
T |
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| Q |
315 |
gccacctccaattcccaagcctactcctgcaccaagtccaattcccaacccaccaaggtccaaacccaaatccttccttgctact |
399 |
Q |
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| T |
54084582 |
gccacctccaattcccaagcctactcctgcaccaagtccaattcccaacccaccgaggtccaaacccaaatccttccttgctact |
54084498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 139 - 392
Target Start/End: Complemental strand, 54081379 - 54081126
Alignment:
| Q |
139 |
ccaccaccgcgacttctaccaccggatcccgaaccagcccgagagcctgcatatgagcctgcctccgaccctgccccagaaccggaaccggaactagaag |
238 |
Q |
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| T |
54081379 |
ccaccaccgcgacttctaccacctgatcccgaaccagcccgagagcctgcatatgagcctgcttccgaccctgccccggaaccagacccagaactagaag |
54081280 |
T |
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| Q |
239 |
atgaagatgatgatgaacttgaggaagaactagaaccagagccagagccagctcctgctccggctccagagccactgccacctccaattcccaagcctac |
338 |
Q |
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| T |
54081279 |
acgaagaggacgatgaacttgaggaagagctagaaccagaaccagagcctgcaccagctccggctccagagccactgccacctccaattcctaaaccaac |
54081180 |
T |
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| Q |
339 |
tcctgcaccaagtccaattcccaacccaccaaggtccaaacccaaatccttcct |
392 |
Q |
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| T |
54081179 |
tcctgcaccaagtccaattcccaatccaccaaggtccaaacccaaatccttcct |
54081126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 54084947 - 54084802
Alignment:
| Q |
1 |
taatctattgcactaaacagtctaagatttgatattatttaaatcatccgtattatttatatatttgtcaatcaattcatgcttttcctgaattaatcac |
100 |
Q |
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| T |
54084947 |
taatttattgcaccaaacagtctaagattttcttttatttaaatcaaccgtattatctatatatttgtcaatcaattcatgcttttccttaattaatcac |
54084848 |
T |
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| Q |
101 |
caccaccttcaccataaccagagccctgcccatagcctccaccacc |
146 |
Q |
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| T |
54084847 |
caccaccttcaccataaccagagccctgcccatagcctccaccacc |
54084802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 54081527 - 54081480
Alignment:
| Q |
72 |
tcaattcatgcttttcctgaattaatcaccaccaccttcaccataacc |
119 |
Q |
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| T |
54081527 |
tcaattcatgcatttcctgaattaatcacccccaccttcaccataacc |
54081480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 54081460 - 54081423
Alignment:
| Q |
109 |
tcaccataaccagagccctgcccatagcctccaccacc |
146 |
Q |
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| T |
54081460 |
tcaccataaccagagccctgcccagagcctccaccacc |
54081423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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