View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11193_low_7 (Length: 388)
Name: NF11193_low_7
Description: NF11193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11193_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 97 - 309
Target Start/End: Original strand, 54085019 - 54085233
Alignment:
| Q |
97 |
atggttgatgccatgcatcatgtgtgttttagtaataaaaatcagttgtgtttcaattcaacctttgttttagtcttttcctgttatgattccaaatttc |
196 |
Q |
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| T |
54085019 |
atggttgatgccatgcatcatgtgtgttttagtaataaaaatcagttgtgtttcaattcaacctttgttttagtcttttcctgttatgattccaaatttc |
54085118 |
T |
|
| Q |
197 |
caatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctgaattcagatatat--aaaagag |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54085119 |
caatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctgaattcagatatataaaaaagag |
54085218 |
T |
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| Q |
295 |
tattacttaattaag |
309 |
Q |
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||||||||||||||| |
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| T |
54085219 |
tattacttaattaag |
54085233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 54084887 - 54084997
Alignment:
| Q |
1 |
tatagataatacggttgatttaaataaaagaaaatcttagactgtttggtgcaataaattagtagttggtgtgtacctaaataatgaacatgttagatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54084887 |
tatagataatacggttgatttaaataaaagaaaatcttagactgtttggtgcaataaattagtagctggtgtgtacctaaataatgaacatgttagatgg |
54084986 |
T |
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| Q |
101 |
ttgatgccatg |
111 |
Q |
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| T |
54084987 |
ttgatgccatg |
54084997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 79 - 288
Target Start/End: Original strand, 54081596 - 54081802
Alignment:
| Q |
79 |
aaataatgaacatgttagatggttgatgccatgcatcatgtgtgttttagt-aataaaaatcagttgtgtttcaatt-caaccttt-gttttagtctttt |
175 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||||| |||||||| ||||||||||| | |
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| T |
54081596 |
aaataatgaacacgttagatggttgattccatgcatcatgtgtgttttagtgaagaaaaattagttgtgtttcaatttcaaccttttgttttagtcttct |
54081695 |
T |
|
| Q |
176 |
cctgttatgattccaaatttccaatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctga |
275 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| | |||| ||||| ||| |
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| T |
54081696 |
--tgttatga----aaatttccaatatctacttgtaatttggcatagctttaactttttgagttgtagatgatggcactgttgtattgtaccatggttga |
54081789 |
T |
|
| Q |
276 |
attcagatatata |
288 |
Q |
| |
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||||||||||||| |
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|
| T |
54081790 |
attcagatatata |
54081802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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