View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11194_high_2 (Length: 460)
Name: NF11194_high_2
Description: NF11194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11194_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 188 - 431
Target Start/End: Complemental strand, 51398640 - 51398401
Alignment:
| Q |
188 |
tggcaaaattaattaatattcaaattctagtgttggaaaacacgtttatttccaggtgaagcaatctatnnnnnnnnnnnnnnnngtaaataacatgaaa |
287 |
Q |
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| T |
51398640 |
tggcaaaattaattaatattcaaattctagtgttggaaaacacgtttatttccaggtgaagcaatctataaaaaaaaa-------gtaa-taacatgaaa |
51398549 |
T |
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| Q |
288 |
gtttagacgcttacctcctgatatgaaactttgatttcttctacggaagaaatttgaggaataatttcacaccttctcaattgcactta----gttatgt |
383 |
Q |
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| T |
51398548 |
gtttagatgcttacctcctgatatgaaactttgatttcttctacggaagaaatttgaggaataatttcacaccttctcaattgcacttagttagttatgt |
51398449 |
T |
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| Q |
384 |
gtgcaattaattttgtattcatcaaataagatagtacatgtaacaaat |
431 |
Q |
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| T |
51398448 |
gtgcaattaattttgtattcatcaaataagatagtacatgtaataaat |
51398401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 51398883 - 51398724
Alignment:
| Q |
32 |
ttgttacatgctcttccttgctggttctgtttttgtttcttggatggttcaaagtttcaatgtttgttctgtgattctgtttcttatgtttctgcatgca |
131 |
Q |
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| T |
51398883 |
ttgttacatgctcttccttgctggttctgtttttgtttcttggatgattcaaagtttcaatgtttgttctgtgattctgtttcttatgtttctgcgtgca |
51398784 |
T |
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| Q |
132 |
tgtgtgatgaagtatttgtaaccatgaaagagtgaatata--tatacgtgtgtagcactg |
189 |
Q |
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| T |
51398783 |
tgtgtgatgaagtatttgtaaccatgaaagagtgaatatatatatacgtgtgtagcactg |
51398724 |
T |
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