View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11194_high_4 (Length: 427)
Name: NF11194_high_4
Description: NF11194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11194_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 32707090 - 32706698
Alignment:
| Q |
18 |
atcatcatattgtacagcagcagatgtcaaagcacattatattcatattcatagccaacgcattctagtaaaatatttccgtagcggcacaatttagaca |
117 |
Q |
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||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32707090 |
atcattatattgtgcagcagcagatgtaaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatttagaca |
32706991 |
T |
|
| Q |
118 |
ttgcacaaaaaactgcagtagcttacgtattgagaatcgtaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatctgggat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32706990 |
ttgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatctgggat |
32706891 |
T |
|
| Q |
218 |
atttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgtcgttacctgaaatcgacgcattctga |
317 |
Q |
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| T |
32706890 |
atttggaagtgaaattgatgcaccacgcctatagctgctatgcctgtgtcttggaaagtagaatttgtaatcgtcgttagctgaaatcgacgcattctga |
32706791 |
T |
|
| Q |
318 |
tataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataataaagaggaaggagctaat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32706790 |
tataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataataaagaggaaggagctaat |
32706698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 32749306 - 32749254
Alignment:
| Q |
334 |
agtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaa |
386 |
Q |
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||||||| |||| |||| |||||||||||||||||||||| ||||||||||| |
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| T |
32749306 |
agtgaaagcagcatagtaccaattttcaatctctacaaacatagaaatccaaa |
32749254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 3001889 - 3001615
Alignment:
| Q |
18 |
atcatcatattgtacagcagcagatgtcaaagcacattatattcatattcatagccaacgcattctagtaaaatatttccgtagcggca-caatttagac |
116 |
Q |
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||||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||| |||||||||| |
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| T |
3001889 |
atcattatattgtgcagcagcagatgccaaagcacattatattcatattcataaccaacacatgctagtaaaatatttccgtagtggcaacaatttagac |
3001790 |
T |
|
| Q |
117 |
attgcacaaaaaactgcagtagcttacgtattgagaatcgtaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatctggga |
216 |
Q |
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||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3001789 |
attgcacaaaaaactgcagtagcttacgtattgagcatcttgaaagcagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatgtggga |
3001690 |
T |
|
| Q |
217 |
tatttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgt |
291 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
3001689 |
tatttggaagtgaaattgatgcaccacgcctatacctgctatacctgtgtcttggagagtagaatttgtaatcgt |
3001615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 3001291 - 3001217
Alignment:
| Q |
310 |
cattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatcca |
384 |
Q |
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||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
3001291 |
cattctggtataggaaaaagtaacagtgaaaacagcacagtaccaattttcaatatctacaaacaaagaaatcca |
3001217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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