View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11194_high_5 (Length: 414)
Name: NF11194_high_5
Description: NF11194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11194_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 3163314 - 3163530
Alignment:
| Q |
21 |
caaaggaaactaatcctattatttgaaactgtaaaatgtgcactcttctttcagtaaggagatacaaaagaaataaaccagtggctgtttttccatttgt |
120 |
Q |
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| T |
3163314 |
caaaggaaactaatcctcttatttgaaactgtaaaatgtacactcttctttcagtaatgagatacaaaaaaaaaa----agtggctgtttttccatttgt |
3163409 |
T |
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| Q |
121 |
gttcaacaaaatacatgggaaaatagttatattaaactgtttttaaacaaagtgaatcacac-agaagaaaccattaaaattttaaaatgtaagaccata |
219 |
Q |
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| T |
3163410 |
gatcaacaaaatacatggcaaagtagttatattgaattgtttttgaacaatttgaatcacacaagaataaaccaatacaattttaaaatgtaaggcc--a |
3163507 |
T |
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| Q |
220 |
tagataacaatgtacaaaaactt |
242 |
Q |
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| T |
3163508 |
tagataacaatgttcaacaactt |
3163530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 3166762 - 3166794
Alignment:
| Q |
267 |
ccaatgcataaactatttggagatacagcacag |
299 |
Q |
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| T |
3166762 |
ccaatgcataaactatttggagatacagcacag |
3166794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 3855685 - 3855632
Alignment:
| Q |
332 |
aatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
385 |
Q |
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| T |
3855685 |
aatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
3855632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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