View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11194_high_7 (Length: 333)
Name: NF11194_high_7
Description: NF11194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11194_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 25926855 - 25927127
Alignment:
| Q |
17 |
tatagattttatttgttttatagagataacataagttaaatgtgacaacatgatttaaaattgacaacaaaatttattaatttaactgaatttcataatt |
116 |
Q |
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| T |
25926855 |
tatagattttatttgttttataaagataacataaattaaatgtgacaacatgatttaaaattgacaacaaaatttattaatttaactgaatttcataatt |
25926954 |
T |
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| Q |
117 |
catttacattaacatcacactatatatgtagtaaaaacatttggaaactaaagataaatttgcattacaagaagattgagggagaaggtttttcatccct |
216 |
Q |
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||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25926955 |
catctatattagcatcacactatatatgtagtaaaaacatttggaaactaaagataaatttgcattacaagaagatcgagggagaaggtttttcatccct |
25927054 |
T |
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| Q |
217 |
ctcatgtgccgtatgaggaagataggaacacaagatgattgagcaggagaaagttaaaattgatctaaacaat |
289 |
Q |
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| T |
25927055 |
ctcatgtgtcgtaggaggaatataggaacacaagatgattgagtaggagaaagttaaaattgatctaaacaat |
25927127 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 5746977 - 5747045
Alignment:
| Q |
69 |
atttaaaattgacaacaaaatttattaatttaactgaatttcataattcatttacattaacatcacact |
137 |
Q |
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| T |
5746977 |
atttaaaatagacaacaaaatttattaattgaacacaatttcataatatatttatattaacatcacact |
5747045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 98
Target Start/End: Original strand, 43328270 - 43328299
Alignment:
| Q |
69 |
atttaaaattgacaacaaaatttattaatt |
98 |
Q |
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| T |
43328270 |
atttaaaattgacaacaaaatttattaatt |
43328299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 52975251 - 52975312
Alignment:
| Q |
64 |
acatgatttaaaattgacaacaaaatttattaatttaactgaatttcataattcatttacat |
125 |
Q |
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|||| |||||||||||||||||||||| || |||| || ||||||||||| ||||||||| |
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| T |
52975251 |
acataatttaaaattgacaacaaaattgatcaattgaatacaatttcataatacatttacat |
52975312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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