View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11194_high_8 (Length: 333)
Name: NF11194_high_8
Description: NF11194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11194_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 41548228 - 41547942
Alignment:
| Q |
10 |
aaatgaagaaagtacaagaaagttataatgctctcttgaaggaagccaagacggctgaaaaaactcataataagttgaaacaagaaagtaaggaaactat |
109 |
Q |
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| T |
41548228 |
aaatgaagaaagtacaagaaagttataatgctctcttgaaggaagccaagacggctgaaaaaactcataataagttgaaacaagaaagtaaggaaactat |
41548129 |
T |
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| Q |
110 |
tgaatttctaagaaagagaaacgttgggttgaagtgtgaggttgacaggttgaacgnnnnnnngatggaggaagaccatgaacttgaagtgttgagacaa |
209 |
Q |
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| T |
41548128 |
tgaatttctaagaaagagaaacgttgggttgaagtgtgaggttgacaggttgaacgaaaaaaagatggaggaagaccatgaacttgaagtgttgagacaa |
41548029 |
T |
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| Q |
210 |
aagaatggtgagttggagtgtgaggttaataagttggaagaagaaagggtggaggatgggaacaaatttgatgtgctgagaaaaaag |
296 |
Q |
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| T |
41548028 |
aagaatggtgagttggagtgtgaggttaataaattggaagaagaaagggtggaggatgggaacaaatttgatgtgttgagaaaaaag |
41547942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 41547961 - 41547874
Alignment:
| Q |
193 |
ttgaagtgttgagacaaaagaatggtgagttggagtgtgaggttaataagttggaagaagaaagggtggaggatgggaacaaatttga |
280 |
Q |
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| T |
41547961 |
ttgatgtgttgagaaaaaagaatgatgagttggagtgtgaggttaataggttgaaggaagatatggtggagtatgggaacaaatttga |
41547874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 41547877 - 41547774
Alignment:
| Q |
193 |
ttgaagtgttgagacaaaagaatggtgagttggagtgtgaggttaataagttggaagaagaaagggtggaggatgggaacaaatttgatgtgctgagaaa |
292 |
Q |
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| T |
41547877 |
ttgaagtgttaagaaagaagagtgatgagctagagtgtgaggttaataatttgaaggaagatagggtggaggatgggaacaaatttgaagttctaagaaa |
41547778 |
T |
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| Q |
293 |
aaag |
296 |
Q |
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|||| |
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| T |
41547777 |
aaag |
41547774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 296
Target Start/End: Complemental strand, 41509514 - 41509436
Alignment:
| Q |
218 |
tgagttggagtgtgaggttaataagttggaagaagaaagggtggaggatgggaacaaatttgatgtgctgagaaaaaag |
296 |
Q |
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| T |
41509514 |
tgagttgaagtgtgaagttcagaagttgaaagaaaaaagggtggaggatgggaatgaacttgatatgttaagaaaaaag |
41509436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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