View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11194_high_9 (Length: 333)

Name: NF11194_high_9
Description: NF11194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11194_high_9
NF11194_high_9
[»] chr5 (3 HSPs)
chr5 (40-301)||(10239281-10239542)
chr5 (43-301)||(10230504-10230762)
chr5 (40-232)||(10255132-10255324)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 40 - 301
Target Start/End: Original strand, 10239281 - 10239542
Alignment:
Q  40 acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgta 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10239281 acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggcctattgtttggatatcaccgtttggtgta 10239380  T
Q  140 actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10239381 actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggat 10239480  T
Q  240 tatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10239481 tatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagc 10239542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 43 - 301
Target Start/End: Original strand, 10230504 - 10230762
Alignment:
Q  43 tgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgtaact 142  Q
    |||||| ||||| ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| | |    
T  10230504 tgtgtcagagtctattttaggatgcgccgtcatactcatcaagagtttgccgttgaaatcataacggcccattgtttggatgtcaccgtttggtgttagt 10230603  T
Q  143 ttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattat 242  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||  ||| ||||    
T  10230604 ttgacttcataaggaagatctgattctcctaaagcaaaaagacggttaccaaacagagctaaacttgtgttgaccaatccaatgccgttagatgggttat 10230703  T
Q  243 actgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagc 301  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||||||||| ||||||||    
T  10230704 actgaccggttaacacccgtgctacaaccacggatccacgtgccgctaaagcaataagc 10230762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 10255324 - 10255132
Alignment:
Q  40 acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgta 139  Q
    ||||||||||  ||||||||| ||||| || |||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||    
T  10255324 acctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgta 10255225  T
Q  140 actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgtta 232  Q
    |  |||||||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||   || ||||||||||||    
T  10255224 agattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgtta 10255132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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