View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11195_high_10 (Length: 422)
Name: NF11195_high_10
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11195_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 595450 - 595860
Alignment:
| Q |
1 |
aaacagaaacaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgctcaaactaattttagtact |
100 |
Q |
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| T |
595450 |
aaacagaaacaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgttcaaactaattttagtact |
595549 |
T |
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| Q |
101 |
attttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtctactttag |
200 |
Q |
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| T |
595550 |
attttaccaatcatagcaaaaatggattactgtcttgattgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtctactttag |
595649 |
T |
|
| Q |
201 |
tttctacgtctattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaaggtagcag |
300 |
Q |
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| T |
595650 |
tttctacgtctattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaaggtagcag |
595749 |
T |
|
| Q |
301 |
cttttggtgttcaatatcaatcaaatcttccttttcgctctttacannnnnnnggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttg |
400 |
Q |
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| T |
595750 |
cttttggtgttcaatatcaatcaaatcttccttttcgctctttacatttttttggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttg |
595849 |
T |
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| Q |
401 |
ttcttgatgat |
411 |
Q |
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| T |
595850 |
ttctttatgat |
595860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 329
Target Start/End: Complemental strand, 23962413 - 23962328
Alignment:
| Q |
244 |
ttaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaaggtagcagcttttggtgttcaatatcaatcaaatctt |
329 |
Q |
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| T |
23962413 |
ttaaaggtatgtcattgtcttttcgtgcggtgttggaaacttcttcgaaggtagtagcttttgatgttcaatatcaatcaagtctt |
23962328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 17373398 - 17373455
Alignment:
| Q |
354 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttcttgatgat |
411 |
Q |
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| T |
17373398 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgat |
17373455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 4590038 - 4590129
Alignment:
| Q |
103 |
tttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtcta |
194 |
Q |
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| T |
4590038 |
tttaccaatcatagcagaaataaattcctgtcctgaatgctttacttgtttttagtttgttgacagaccagggagaattcgagagtcgtcta |
4590129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 33006205 - 33006152
Alignment:
| Q |
357 |
aaacaaatctcattctttatgattagtcaaagaaaaagatcttgttcttgatgat |
411 |
Q |
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| T |
33006205 |
aaacaaatctcatt-tttatgattagtcaaagaaaaagatctcgttctttatgat |
33006152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 4603679 - 4603770
Alignment:
| Q |
100 |
tattttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgt |
191 |
Q |
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||||||||||||||||||| || | |||||| || |||||||||| |||| ||||| ||||| ||||| |||||||||||| ||| |||| |
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| T |
4603679 |
tattttaccaatcatagcagaattaaattactatcctgaatgctttacttgtttttaatttgtcgacaggtcagtgagaattcgagaatcgt |
4603770 |
T |
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