View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11195_high_11 (Length: 403)

Name: NF11195_high_11
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11195_high_11
NF11195_high_11
[»] chr3 (2 HSPs)
chr3 (18-396)||(45382527-45382906)
chr3 (239-285)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (210-290)||(27661703-27661783)
chr6 (253-290)||(26650237-26650274)
chr6 (253-290)||(26756205-26756242)
chr6 (254-294)||(12627824-12627864)
chr6 (250-290)||(29449688-29449728)
chr6 (315-365)||(8148268-8148318)
chr6 (309-362)||(20809178-20809231)
chr6 (261-290)||(28783014-28783043)
chr6 (251-308)||(34057962-34058019)
chr6 (328-364)||(29670971-29671007)
chr6 (251-287)||(30537508-30537544)
chr6 (314-362)||(31811989-31812037)
[»] chr7 (4 HSPs)
chr7 (250-290)||(43160491-43160531)
chr7 (252-299)||(10893872-10893919)
chr7 (248-290)||(650524-650566)
chr7 (254-290)||(18750887-18750923)
[»] chr5 (4 HSPs)
chr5 (251-290)||(28136673-28136712)
chr5 (253-290)||(645342-645379)
chr5 (254-299)||(11601688-11601733)
chr5 (314-362)||(12478334-12478382)
[»] chr8 (4 HSPs)
chr8 (315-357)||(14229600-14229642)
chr8 (250-290)||(32691750-32691790)
chr8 (251-299)||(41686804-41686852)
chr8 (251-299)||(31681833-31681881)
[»] chr2 (1 HSPs)
chr2 (248-344)||(9956949-9957045)
[»] chr4 (4 HSPs)
chr4 (240-290)||(10164460-10164510)
chr4 (252-290)||(28890768-28890806)
chr4 (258-294)||(29388374-29388410)
chr4 (250-290)||(45615427-45615467)
[»] chr1 (3 HSPs)
chr1 (254-299)||(264615-264660)
chr1 (310-350)||(27835482-27835522)
chr1 (254-290)||(43609830-43609866)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 45382527 - 45382906
Alignment:
Q  18 ctttttaccttcataagattgctgtagctagtgaagaaagagattgtgaaaagatagacaagctcactgatgacactgctgagagaatacaatctggttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382527 ctttttaccttcataagattgctgtagctagtgaagaaagagattgtgaaaagatagacaagctcactgatgacactgctgagagaatacaatctggttt 45382626  T
Q  118 ggctgtaagtttatttcatacctgatttataagtttatttttccactcatttttcattatctatgaagcactgacatgaacaccagagacatgaacaccg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||          |||||||||||||| |    
T  45382627 ggctgtaagtttatttcatacctgatttataagtttatttttccactcatttttcgttatctatgaagcactga---------gagagacatgaacactg 45382717  T
Q  218 gactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat-----------atgttggtgacagaca 306  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||| ||||||    
T  45382718 gacttcacactgacattcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacatatgtcggtgacatgttggtgtcagaca 45382817  T
Q  307 cagacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttcattatttaccaattagtcacttcctttgctt 396  Q
    ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| |||||||||||    
T  45382818 cagacaaatgtcggacaccggacatgccttcgatcagaagtat-tgtgctacaaagttcattatttaccaattagtcaattcctttgctt 45382906  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 47362558 - 47362604
Alignment:
Q  239 cgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaat 285  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||    
T  47362558 cgtcaacatcagtaataatttaagaaaattacataattgaatgtaat 47362604  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 27661703 - 27661783
Alignment:
Q  210 gaacaccggactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 290  Q
    |||||||| |||| ||||| ||||| ||||||||||||   ||||||||||||||||||| |||||| |||||||||||||    
T  27661703 gaacaccgaactcgacactaacactgattcgtcaacattgatagtaatttaagaaaataatatatttcaatgtaatcacat 27661783  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 290
Target Start/End: Complemental strand, 26650274 - 26650237
Alignment:
Q  253 gtaatttaagaaaataacatatttgaatgtaatcacat 290  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650274 gtaatttaagaaaataacatatttgaatgtaatcacat 26650237  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 290
Target Start/End: Complemental strand, 26756242 - 26756205
Alignment:
Q  253 gtaatttaagaaaataacatatttgaatgtaatcacat 290  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756242 gtaatttaagaaaataacatatttgaatgtaatcacat 26756205  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 12627864 - 12627824
Alignment:
Q  254 taatttaagaaaataacatatttgaatgtaatcacatatgt 294  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  12627864 taatttaagaaaataacatatttcaatgtaatcatatatgt 12627824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 29449688 - 29449728
Alignment:
Q  250 gtagtaatttaagaaaataacatatttgaatgtaatcacat 290  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  29449688 gtagtaatttcagaaaataacataattgaatgtaatcacat 29449728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 8148318 - 8148268
Alignment:
Q  315 tgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttc 365  Q
    ||||||||||| ||||||||||| ||| |||||||| |||||||| |||||    
T  8148318 tgtcggacaccagacatgccttccatcggaaatgtcggtgctacatagttc 8148268  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 20809231 - 20809178
Alignment:
Q  309 gacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 362  Q
    |||| ||||||||||||||||||||||||||||  || ||||  ||||||||||    
T  20809231 gacacatgtcggacaccggacatgccttcgatccaaagtgtcgatgctacaaag 20809178  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 290
Target Start/End: Complemental strand, 28783043 - 28783014
Alignment:
Q  261 agaaaataacatatttgaatgtaatcacat 290  Q
    ||||||||||||||||||||||||||||||    
T  28783043 agaaaataacatatttgaatgtaatcacat 28783014  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 34057962 - 34058019
Alignment:
Q  251 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacaca 308  Q
    ||||||| ||||||||| ||||| |||| ||||||||||| ||| |||| ||||||||    
T  34057962 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacaca 34058019  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 364
Target Start/End: Original strand, 29670971 - 29671007
Alignment:
Q  328 acatgccttcgatcagaaatgtctgtgctacaaagtt 364  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  29670971 acatgccttcgatcagaaatgtcggtggtacaaagtt 29671007  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 30537508 - 30537544
Alignment:
Q  251 tagtaatttaagaaaataacatatttgaatgtaatca 287  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  30537508 tagtaatttaagaaaataacataattgaatgttatca 30537544  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 31811989 - 31812037
Alignment:
Q  314 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 362  Q
    ||||||||||| ||||||||||| |||||||  |||| |||||||||||    
T  31811989 atgtcggacactggacatgcctttgatcagaggtgtcagtgctacaaag 31812037  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 43160491 - 43160531
Alignment:
Q  250 gtagtaatttaagaaaataacatatttgaatgtaatcacat 290  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43160491 gtagtaatttaagaaaataacataattgaatgtaatcacat 43160531  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 10893919 - 10893872
Alignment:
Q  252 agtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 299  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  10893919 agtaatttaagaaaatgacataattgaatgtaatcacatgtgttggtg 10893872  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 650524 - 650566
Alignment:
Q  248 cagtagtaatttaagaaaataacatatttgaatgtaatcacat 290  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||    
T  650524 cagtagtaatttaagaaaatgacataattgaatgcaatcacat 650566  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 18750887 - 18750923
Alignment:
Q  254 taatttaagaaaataacatatttgaatgtaatcacat 290  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  18750887 taatttaagaaaatgacataattgaatgtaatcacat 18750923  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 28136673 - 28136712
Alignment:
Q  251 tagtaatttaagaaaataacatatttgaatgtaatcacat 290  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28136673 tagtaatttaagaaaataacatatttcaatgtaatcacat 28136712  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 645342 - 645379
Alignment:
Q  253 gtaatttaagaaaataacatatttgaatgtaatcacat 290  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  645342 gtaatttaagaaaatgacataattgaatgtaatcacat 645379  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 11601688 - 11601733
Alignment:
Q  254 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 299  Q
    |||||||||||| |||  || |||||||||||||||||||||||||    
T  11601688 taatttaagaaactaaattaattgaatgtaatcacatatgttggtg 11601733  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 12478334 - 12478382
Alignment:
Q  314 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 362  Q
    ||||| |||||| |||| |||||| |||||||||||| |||||||||||    
T  12478334 atgtcagacaccagacacgccttccatcagaaatgtcggtgctacaaag 12478382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 357
Target Start/End: Original strand, 14229600 - 14229642
Alignment:
Q  315 tgtcggacaccggacatgccttcgatcagaaatgtctgtgcta 357  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  14229600 tgtcggacaccggacatgccttcgatcagaagtgtcagtgcta 14229642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 32691750 - 32691790
Alignment:
Q  250 gtagtaatttaagaaaataacatatttgaatgtaatcacat 290  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  32691750 gtagtaatttaagaaaatgacataattgaatgtaatcacat 32691790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 41686852 - 41686804
Alignment:
Q  251 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 299  Q
    ||||||||||||||||||||||| |||| | ||||||||| ||||||||    
T  41686852 tagtaatttaagaaaataacatagttgagtctaatcacatgtgttggtg 41686804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 31681881 - 31681833
Alignment:
Q  251 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 299  Q
    ||||||||||||||||| ||||| ||||||| |||||||| ||| ||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtg 31681833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 344
Target Start/End: Complemental strand, 9957045 - 9956949
Alignment:
Q  248 cagtagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacacagacaaatgtcggacaccggacatgccttcgatcaga 344  Q
    ||||| |||||| | |||||||  |||||||| ||||| |||| |||  ||| | ||||| |||| ||||| ||||||||||||||||| |||||||    
T  9957045 cagtaataatttgacaaaataaattatttgaacgtaatgacatgtgtccgtgccggacaccgacacatgtcagacaccggacatgcctttgatcaga 9956949  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 10164460 - 10164510
Alignment:
Q  240 gtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 290  Q
    ||||||| | ||||||||||||||||||  |||| ||||||||||||||||    
T  10164460 gtcaacaccggtagtaatttaagaaaatggcataattgaatgtaatcacat 10164510  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 28890768 - 28890806
Alignment:
Q  252 agtaatttaagaaaataacatatttgaatgtaatcacat 290  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  28890768 agtaatttaagaaaataacataattgaatgcaatcacat 28890806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 29388410 - 29388374
Alignment:
Q  258 ttaagaaaataacatatttgaatgtaatcacatatgt 294  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  29388410 ttaagaaaatgacataattgaatgtaatcacatatgt 29388374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 45615467 - 45615427
Alignment:
Q  250 gtagtaatttaagaaaataacatatttgaatgtaatcacat 290  Q
    |||||||||||||||||| ||||| ||||| ||||||||||    
T  45615467 gtagtaatttaagaaaatgacataattgaacgtaatcacat 45615427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 264615 - 264660
Alignment:
Q  254 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 299  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||    
T  264615 taatttaagaaagtaacatacttaaatgtaatcacatgtgttggtg 264660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 27835482 - 27835522
Alignment:
Q  310 acaaatgtcggacaccggacatgccttcgatcagaaatgtc 350  Q
    |||||||||||||||| ||||||||||| ||||||| ||||    
T  27835482 acaaatgtcggacaccagacatgccttcaatcagaagtgtc 27835522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 43609866 - 43609830
Alignment:
Q  254 taatttaagaaaataacatatttgaatgtaatcacat 290  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  43609866 taatttgagaaaataacataattgaatgtaatcacat 43609830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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