View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11195_high_15 (Length: 318)

Name: NF11195_high_15
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11195_high_15
NF11195_high_15
[»] chr2 (1 HSPs)
chr2 (11-300)||(29178473-29178763)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 29178763 - 29178473
Alignment:
Q  11 gtgagatgaattatatttgtgggagagggagtatgtattggaaaagaaatatgtcaaatggaacatgggtgttagactttttattttgttatatatgata 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29178763 gtgatatgaattatatttgtgggagagggagtatgtattggaaaagaaatatgtcaaatggaacatgggtgttagactttttattttgttatatatgata 29178664  T
Q  111 tgtgaatttaagtaagatgaggaacatgtgcagttatagatcaataaaaggtagaaataagttttgtgttgaagtcaactatgactagttaaaattaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29178663 tgtgaatttaagtaagatgaggaacatgtgcagttatagatcaataaaaggtagaaataagttttgtgttgaagtcaactatgactagttaaaattaaaa 29178564  T
Q  211 ccaattgtcctcattaacaatattatcctgagtttacttaatcctttagattaaatgttcatgactt-ttttcctttgtcttaattattag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29178563 ccaattgtcctcattaacaatattatcctgagtttacttaatcctttagattaaatgttcatgactttttttcctttgtcttaattattag 29178473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University