View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11195_high_17 (Length: 301)

Name: NF11195_high_17
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11195_high_17
NF11195_high_17
[»] chr6 (21 HSPs)
chr6 (12-250)||(22702948-22703186)
chr6 (20-250)||(22697772-22698002)
chr6 (12-250)||(21402016-21402254)
chr6 (80-250)||(29490812-29490982)
chr6 (103-250)||(2817401-2817548)
chr6 (103-250)||(34142781-34142928)
chr6 (103-250)||(34155397-34155544)
chr6 (103-250)||(6727777-6727924)
chr6 (103-250)||(34376464-34376611)
chr6 (103-250)||(24190654-24190802)
chr6 (103-250)||(31983475-31983622)
chr6 (20-92)||(31981832-31981904)
chr6 (254-300)||(22699738-22699784)
chr6 (20-92)||(34376198-34376270)
chr6 (20-92)||(2817901-2817973)
chr6 (20-92)||(24191126-24191198)
chr6 (20-92)||(24192223-24192295)
chr6 (20-80)||(34142358-34142418)
chr6 (20-80)||(34154974-34155034)
chr6 (39-92)||(6728193-6728246)
chr6 (12-60)||(29491008-29491056)
[»] chr5 (23 HSPs)
chr5 (12-250)||(17510333-17510571)
chr5 (12-250)||(42019848-42020086)
chr5 (12-224)||(17505228-17505440)
chr5 (12-250)||(42024628-42024866)
chr5 (12-224)||(43579935-43580147)
chr5 (12-224)||(41858861-41859071)
chr5 (114-224)||(41853846-41853956)
chr5 (103-223)||(1413100-1413220)
chr5 (103-224)||(36254517-36254638)
chr5 (103-250)||(24770605-24770752)
chr5 (103-219)||(26709688-26709804)
chr5 (103-219)||(26979422-26979538)
chr5 (103-193)||(24776116-24776206)
chr5 (20-92)||(1413806-1413878)
chr5 (20-92)||(24776563-24776635)
chr5 (254-300)||(17508630-17508676)
chr5 (254-300)||(41857149-41857195)
chr5 (254-300)||(42023542-42023588)
chr5 (254-300)||(24772849-24772895)
chr5 (20-92)||(24771108-24771180)
chr5 (20-92)||(26709372-26709444)
chr5 (20-92)||(26979106-26979178)
chr5 (20-92)||(36254105-36254177)
[»] chr4 (35 HSPs)
chr4 (12-250)||(8984987-8985225)
chr4 (12-250)||(13700785-13701023)
chr4 (12-250)||(21299415-21299653)
chr4 (12-250)||(21304535-21304773)
chr4 (12-250)||(8979867-8980105)
chr4 (12-250)||(54991751-54991989)
chr4 (20-224)||(39999405-39999609)
chr4 (20-224)||(40004363-40004567)
chr4 (20-224)||(54343539-54343743)
chr4 (20-224)||(54348693-54348897)
chr4 (20-224)||(36359664-36359868)
chr4 (12-250)||(54990392-54990630)
chr4 (20-224)||(36354478-36354682)
chr4 (103-224)||(53798329-53798450)
chr4 (103-250)||(41393858-41394005)
chr4 (103-224)||(51018732-51018853)
chr4 (103-250)||(9763273-9763420)
chr4 (103-250)||(13695757-13695904)
chr4 (103-250)||(13711370-13711517)
chr4 (103-250)||(4207042-4207188)
chr4 (103-223)||(47045647-47045767)
chr4 (20-92)||(13695431-13695503)
chr4 (254-300)||(13699067-13699113)
chr4 (254-300)||(21301325-21301371)
chr4 (254-300)||(36357870-36357916)
chr4 (254-300)||(40002798-40002844)
chr4 (254-300)||(54346932-54346978)
chr4 (20-92)||(9763771-9763843)
chr4 (20-92)||(41393512-41393584)
chr4 (20-92)||(53797898-53797970)
chr4 (254-300)||(8981777-8981823)
chr4 (254-300)||(13702945-13702991)
chr4 (20-102)||(51019117-51019199)
chr4 (20-92)||(13710938-13711010)
chr4 (20-92)||(47046060-47046132)
[»] chr1 (18 HSPs)
chr1 (12-250)||(27711598-27711836)
chr1 (12-224)||(37404026-37404238)
chr1 (12-224)||(37409145-37409357)
chr1 (20-224)||(36684270-36684474)
chr1 (21-224)||(34317840-34318043)
chr1 (12-224)||(27716718-27716930)
chr1 (12-224)||(11250731-11250943)
chr1 (103-250)||(5725365-5725512)
chr1 (103-250)||(3585301-3585448)
chr1 (103-249)||(5730771-5730917)
chr1 (103-224)||(48245998-48246119)
chr1 (165-224)||(50959010-50959069)
chr1 (254-300)||(27715000-27715046)
chr1 (20-92)||(5730374-5730446)
chr1 (254-300)||(37405908-37405954)
chr1 (20-92)||(3584870-3584942)
chr1 (254-300)||(5728674-5728721)
chr1 (20-102)||(48246427-48246509)
[»] scaffold0517 (2 HSPs)
scaffold0517 (12-224)||(3838-4050)
scaffold0517 (254-300)||(2120-2166)
[»] chr7 (31 HSPs)
chr7 (20-250)||(33238338-33238568)
chr7 (20-250)||(33243515-33243745)
chr7 (20-224)||(47994136-47994340)
chr7 (20-224)||(47999311-47999515)
chr7 (103-250)||(21080321-21080468)
chr7 (103-224)||(2233978-2234099)
chr7 (103-250)||(32211965-32212112)
chr7 (103-250)||(42572600-42572747)
chr7 (103-224)||(17496100-17496221)
chr7 (103-224)||(17556993-17557114)
chr7 (103-250)||(12935084-12935231)
chr7 (103-250)||(19308876-19309023)
chr7 (103-250)||(47176496-47176643)
chr7 (110-224)||(16538699-16538813)
chr7 (110-224)||(16626849-16626963)
chr7 (103-250)||(43893542-43893689)
chr7 (171-250)||(47544749-47544828)
chr7 (20-92)||(2234384-2234456)
chr7 (254-300)||(33241732-33241778)
chr7 (254-300)||(47997529-47997575)
chr7 (20-92)||(12934666-12934738)
chr7 (20-92)||(17495672-17495744)
chr7 (20-92)||(17557470-17557542)
chr7 (20-92)||(19309365-19309437)
chr7 (20-92)||(21080793-21080865)
chr7 (20-92)||(42572214-42572286)
chr7 (20-92)||(43893138-43893210)
chr7 (20-92)||(16539166-16539238)
chr7 (20-92)||(16626424-16626496)
chr7 (20-92)||(47176904-47176976)
chr7 (20-80)||(32212419-32212479)
[»] scaffold0014 (3 HSPs)
scaffold0014 (20-224)||(31881-32085)
scaffold0014 (20-224)||(26709-26913)
scaffold0014 (254-300)||(30102-30148)
[»] chr3 (27 HSPs)
chr3 (12-224)||(55129065-55129276)
chr3 (12-217)||(17368994-17369199)
chr3 (20-250)||(20090191-20090421)
chr3 (20-250)||(20095316-20095546)
chr3 (20-224)||(15762585-15762789)
chr3 (20-224)||(15767746-15767950)
chr3 (103-250)||(3481649-3481796)
chr3 (103-224)||(34128437-34128558)
chr3 (103-224)||(17358566-17358686)
chr3 (103-224)||(30338126-30338247)
chr3 (103-250)||(30341204-30341351)
chr3 (103-224)||(54271312-54271433)
chr3 (103-193)||(3476249-3476339)
chr3 (103-193)||(4117007-4117097)
chr3 (20-92)||(3482166-3482238)
chr3 (254-300)||(3478439-3478485)
chr3 (254-300)||(15764511-15764557)
chr3 (254-300)||(17362634-17362680)
chr3 (254-300)||(17367276-17367322)
chr3 (254-300)||(20092142-20092188)
chr3 (20-92)||(17358107-17358179)
chr3 (20-92)||(54270914-54270986)
chr3 (20-92)||(4117345-4117417)
chr3 (20-92)||(30338506-30338578)
chr3 (20-92)||(34128923-34128995)
chr3 (20-92)||(3476699-3476771)
chr3 (20-92)||(10321712-10321784)
[»] chr2 (14 HSPs)
chr2 (12-250)||(40392594-40392832)
chr2 (20-224)||(42728175-42728379)
chr2 (20-224)||(44096638-44096842)
chr2 (20-223)||(42723007-42723210)
chr2 (33-224)||(44754161-44754352)
chr2 (33-224)||(44759327-44759518)
chr2 (12-224)||(40518075-40518292)
chr2 (33-221)||(40519929-40520122)
chr2 (103-250)||(4162895-4163042)
chr2 (103-250)||(28751021-28751168)
chr2 (254-300)||(42724940-42724986)
chr2 (254-300)||(44756092-44756138)
chr2 (20-92)||(4163331-4163403)
chr2 (20-92)||(28751483-28751555)
[»] scaffold0055 (1 HSPs)
scaffold0055 (20-224)||(3360-3564)
[»] scaffold0052 (1 HSPs)
scaffold0052 (20-224)||(80971-81175)
[»] chr8 (22 HSPs)
chr8 (20-224)||(32010862-32011066)
chr8 (20-224)||(32016036-32016240)
chr8 (12-250)||(2165394-2165633)
chr8 (103-250)||(43998546-43998693)
chr8 (103-250)||(17955134-17955281)
chr8 (103-224)||(24885324-24885445)
chr8 (103-250)||(42513848-42513995)
chr8 (103-193)||(21641184-21641273)
chr8 (254-300)||(21645574-21645620)
chr8 (20-102)||(24884982-24885064)
chr8 (254-300)||(32014255-32014301)
chr8 (20-92)||(21643835-21643907)
chr8 (20-92)||(21643020-21643092)
chr8 (20-92)||(21643395-21643467)
chr8 (20-92)||(43998984-43999056)
chr8 (21-84)||(42514182-42514245)
chr8 (20-92)||(21641520-21641592)
chr8 (20-92)||(21641895-21641967)
chr8 (20-92)||(21642270-21642342)
chr8 (20-92)||(21642645-21642717)
chr8 (256-296)||(19434003-19434043)
chr8 (256-296)||(19570152-19570192)
[»] scaffold0594 (2 HSPs)
scaffold0594 (103-250)||(8534-8681)
scaffold0594 (20-92)||(8962-9034)
[»] scaffold0166 (5 HSPs)
scaffold0166 (103-250)||(12986-13133)
scaffold0166 (103-193)||(18500-18590)
scaffold0166 (20-92)||(18946-19018)
scaffold0166 (254-300)||(15233-15279)
scaffold0166 (20-92)||(13493-13565)
[»] scaffold0060 (2 HSPs)
scaffold0060 (103-161)||(37654-37712)
scaffold0060 (20-102)||(37279-37361)
[»] scaffold0165 (1 HSPs)
scaffold0165 (254-300)||(15542-15588)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 22703186 - 22702948
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703186 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 22703087  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703086 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 22702987  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||       |||||||||||||||||||    
T  22702986 agtatactccaagtttttttcattatacactagtgttcc 22702948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 22698002 - 22697772
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22698002 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 22697903  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22697902 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 22697803  T
Q  220 ccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||       |||||||||||||||||||    
T  22697802 ccaagtttttttcattatacactagtgttcc 22697772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 21402016 - 21402254
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||| | |||||||||||||||| |||||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21402016 agagaggagagaaaaccaaagaagagtattcgattcttagtttttgagtgatgaatactattcccaagctctcaatttataaggaggatttctactagag 21402115  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21402116 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 21402215  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |||||||||||       |||||||||||||||||||    
T  21402216 actatactccaagtttttttcattatacactagtgttcc 21402254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 80 - 250
Target Start/End: Complemental strand, 29490982 - 29490812
Alignment:
Q  80 ctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttg 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29490982 ctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttg 29490883  T
Q  180 tgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    ||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||    
T  29490882 tgtttacattccaaaagctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 29490812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 2817548 - 2817401
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817548 ctactagagtgtgtgatctacccaatgtgggacattaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 2817449  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  2817448 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 2817401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 34142781 - 34142928
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34142781 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34142880  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34142881 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34142928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 34155397 - 34155544
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34155397 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34155496  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34155497 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34155544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 6727924 - 6727777
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  6727924 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 6727825  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  6727824 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 6727777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 34376464 - 34376611
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  34376464 ctactagagtgtgttatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 34376563  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34376564 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34376611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 24190802 - 24190654
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaa-ttttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctcca 201  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||     
T  24190802 ctactagagtgtgtgatctacccaatgtgggacataaaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcct 24190703  T
Q  202 caaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    || |   ||||||||||||||||       || ||||||||||||||||    
T  24190702 cataacaactagtatactccaagtttttgccaatatacactagtgttcc 24190654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 31983475 - 31983622
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| | |||| |    
T  31983475 ctactagagtgtgtgatctacccaatgcgggacataaaattttcaattcacactttacactaatttctacatcattgtgtttacattccaatgtctcctc 31983574  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  31983575 ataaaaactagtatactccaagtttttgccaatatacactagtgttcc 31983622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 31981832 - 31981904
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||||||||||||||| |||||||||| |||||||| | |||||||||||| |||||||    
T  31981832 gagaaaaccagagaagagtattcgattctcggttttggagtgaagaataccaatcccgagctctctatttata 31981904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 22699784 - 22699738
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22699784 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 22699738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 34376198 - 34376270
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  34376198 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 34376270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 2817973 - 2817901
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||  |||||||||||||||||   |||||||||||||| |||||||    
T  2817973 gagaaaaccagagaagaggattcgattcttggttttggagtaaagaatctcattcccgagctctctatttata 2817901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 24191198 - 24191126
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||  |||||||||| |||||| | |||||||||||||| |||||||    
T  24191198 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 24191126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 24192295 - 24192223
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||  |||||||||| |||||| | |||||||||||||| |||||||    
T  24192295 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 24192223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 34142358 - 34142418
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagc 80  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | ||||||||||    
T  34142358 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagc 34142418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 34154974 - 34155034
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagc 80  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | ||||||||||    
T  34154974 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagc 34155034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 6728246 - 6728193
Alignment:
Q  39 attcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  6728246 attcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 6728193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 29491056 - 29491008
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagt 60  Q
    |||||||||| |||| |||| ||||||||| ||||||||||||||||||    
T  29491056 agagaggagataaaatcagagaagagtatttgattctcagttttggagt 29491008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 17510333 - 17510571
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510333 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 17510432  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510433 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 17510532  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||       |||||||||||||||||||    
T  17510533 agtatactccaagtttttttcattatacactagtgttcc 17510571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 42019848 - 42020086
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42019848 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 42019947  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42019948 tgtgtgatctatccgatgtgggacataaaattttcaattcacattttacattagtttctccatccttgtgtttacattccaaaggctccacaaactcact 42020047  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||       |||||||||||||||||||    
T  42020048 agtatactccaagtttttttcattatacactagtgttcc 42020086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 17505228 - 17505440
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17505228 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 17505327  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17505328 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacaatagtttttccatccttgtgtttacattccaaaggctccacaaactcact 17505427  T
Q  212 agtatactccaag 224  Q
    |||||| ||||||    
T  17505428 agtatattccaag 17505440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 42024628 - 42024866
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42024628 agagaggagagaaaaccagagaagagtattcgattctcaattttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 42024727  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42024728 tgtgtgatctatccgatgtgggacataaaattttcaattcacattttacactagtttctccatccttatgtttacattccaaaggctccacaaactcact 42024827  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||| ||||       |||||||||||||||||||    
T  42024828 agtatacttcaagtttttttcattatacactagtgttcc 42024866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 43579935 - 43580147
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  43579935 agagaggagagaaaatcagagaagagtattcgattctcagttttggtgtgaaaaatactattcccgagctctcaatttataaggaggatttctactagag 43580034  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43580035 tatgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 43580134  T
Q  212 agtatactccaag 224  Q
    |||||||||||||    
T  43580135 agtatactccaag 43580147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 41858861 - 41859071
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41858861 agagagaagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggagaatttctactagag 41858960  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    |||  |||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  41858961 tgt--gatctacccgatgtgggacatagaattttcaattcacactttacactaatttttccatccttgtgtttacattccaaaggctccacaaactcact 41859058  T
Q  212 agtatactccaag 224  Q
    |||||||||||||    
T  41859059 agtatactccaag 41859071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 41853846 - 41853956
Alignment:
Q  114 tgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactag 213  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41853846 tgtgatctacccgatgtgggacatagaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactccctag 41853945  T
Q  214 tatactccaag 224  Q
    |||||||||||    
T  41853946 tatactccaag 41853956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 1413220 - 1413100
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1413220 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 1413121  T
Q  203 aaactcactagtatactccaa 223  Q
    | |   |||||||||||||||    
T  1413120 ataacaactagtatactccaa 1413100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 36254517 - 36254638
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||    
T  36254517 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaatgtctccac 36254616  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  36254617 ataacaactagtatactccaag 36254638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 24770752 - 24770605
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  24770752 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 24770653  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  24770652 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 24770605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 26709688 - 26709804
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26709688 ctactacaatgtgtaatctactcaatgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccac 26709787  T
Q  203 aaactcactagtatact 219  Q
    ||||  |||||||||||    
T  26709788 aaaccaactagtatact 26709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 26979422 - 26979538
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26979422 ctactacaatgtgtaatctactcaatgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccac 26979521  T
Q  203 aaactcactagtatact 219  Q
    ||||  |||||||||||    
T  26979522 aaaccaactagtatact 26979538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 24776206 - 24776116
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 193  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  24776206 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 24776116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 1413878 - 1413806
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  1413878 gagaaaaccagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 1413806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 24776635 - 24776563
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| | ||| |||||||| |||||||    
T  24776635 gagaaaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttata 24776563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 17508630 - 17508676
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17508630 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17508676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 41857149 - 41857195
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41857149 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 41857195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 42023542 - 42023588
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42023542 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 42023588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 24772895 - 24772849
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  24772895 catcagtggcgtaccttttcccaacaaaaataccattcttagtgatg 24772849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 24771180 - 24771108
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| |||||| || ||||||  ||||||||||||||||||| | ||| |||||||| |||||||    
T  24771180 gagaaaaccagagaagagtgtttgattcttggttttggagtaaagaataccaatcctgagctctctatttata 24771108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 26709372 - 26709444
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| | ||||| |||| ||||||||||||||||| |||||| | | |||||||||||| |||||||    
T  26709372 gagaaaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 26709444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 26979106 - 26979178
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| | ||||| |||| ||||||||||||||||| |||||| | | |||||||||||| |||||||    
T  26979106 gagaaaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 26979178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 36254105 - 36254177
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||| ||| ||||| ||||||||||| |||||||||| |||||| | |||||| ||||||| |||||||    
T  36254105 gagaaaactagagaagaggattcgattctcggttttggagtgaagaatcccattcccaagctctctatttata 36254177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 8985225 - 8984987
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8985225 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 8985126  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8985125 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 8985026  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||       |||||||||||||||||||    
T  8985025 agtatactccaagtttttttcattatacactagtgttcc 8984987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 13700785 - 13701023
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13700785 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 13700884  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13700885 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 13700984  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||       |||||||||||||||||||    
T  13700985 agtatactccaagtttttttcattatacactagtgttcc 13701023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 21299653 - 21299415
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21299653 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 21299554  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21299553 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccacaaactcact 21299454  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||       |||||||||||||||||||    
T  21299453 agtatactccaagtttttttcattatacactagtgttcc 21299415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 21304773 - 21304535
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304773 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 21304674  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304673 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 21304574  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||       |||||||||||||||||||    
T  21304573 agtatactccaagtttttttcattatacactagtgttcc 21304535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 8980105 - 8979867
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8980105 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattctcgagctctcaatttataaggaggatttctactagag 8980006  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8980005 tgtgtgatctacccgatatgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 8979906  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||       |||||||||||||||||||    
T  8979905 agtatactccaagtttttttcattatacactagtgttcc 8979867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 54991751 - 54991989
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54991751 agagaggagagaaaaccagagaagagtattcgattctcagttttgaagtgaagaatactattcccgagctttcaatttataaggaggatttctactagag 54991850  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54991851 tgtgtgatctatccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 54991950  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||       |||||||||||||||||||    
T  54991951 agtatactccaagtttttttcattatacactagtgttcc 54991989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 39999405 - 39999609
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39999405 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 39999504  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  39999505 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 39999604  T
Q  220 ccaag 224  Q
    |||||    
T  39999605 ccaag 39999609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 40004363 - 40004567
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40004363 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 40004462  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  40004463 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 40004562  T
Q  220 ccaag 224  Q
    |||||    
T  40004563 ccaag 40004567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 54343539 - 54343743
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54343539 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 54343638  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  54343639 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 54343738  T
Q  220 ccaag 224  Q
    |||||    
T  54343739 ccaag 54343743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 54348693 - 54348897
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54348693 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 54348792  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  54348793 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 54348892  T
Q  220 ccaag 224  Q
    |||||    
T  54348893 ccaag 54348897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 36359664 - 36359868
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  36359664 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcctgagctctcaatttataaggagaatttctactagagtgtgtgat 36359763  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  36359764 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacatttcaaaggctccacaaactcactagtatact 36359863  T
Q  220 ccaag 224  Q
    |||||    
T  36359864 ccaag 36359868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 54990630 - 54990392
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  54990630 agagaggagagaaaacaagagaagagtatttgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggagaatttctactagag 54990531  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  54990530 tgtgtgatctatccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacattccaaaggctccacaaactcact 54990431  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||       ||||||||| |||||||||    
T  54990430 agtatactccaagtttttttcattatacattagtgttcc 54990392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 36354478 - 36354682
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||    
T  36354478 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactatttctgagctctcaatttataaagaggatttctactagagtgtgtgat 36354577  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  36354578 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacattccaaaggctccacaaattcactagtatact 36354677  T
Q  220 ccaag 224  Q
    |||||    
T  36354678 ccaag 36354682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 53798329 - 53798450
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53798329 ctactagagtgtgtgatctacccaatgtaggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccaaaggctccac 53798428  T
Q  203 aaactcactagtatactccaag 224  Q
    ||||  ||||||||||||||||    
T  53798429 aaaccaactagtatactccaag 53798450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 41393858 - 41394005
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  41393858 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttttccatccttgtgtttacattccaaaggcttcac 41393957  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  41393958 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 41394005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 51018853 - 51018732
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  51018853 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtgtacattccaaagtctccac 51018754  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||| ||||||    
T  51018753 ataacaactagtatattccaag 51018732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 9763420 - 9763273
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  9763420 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcatgctttacactagtttctacatccttgtgtttacattccaaagtctccac 9763321  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  9763320 ataacaactagtatactccaagtttatgccaatatacactagtgttcc 9763273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 13695757 - 13695904
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13695757 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13695856  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13695857 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 13695904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 13711370 - 13711517
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13711370 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13711469  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13711470 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 13711517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 4207042 - 4207188
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| | |||| |    
T  4207042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtg-ttacattccaatgtctcctc 4207140  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  4207141 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 4207188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 47045767 - 47045647
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||| || | |||| |    
T  47045767 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctatttcattgtgtttacattctaatgtctcctc 47045668  T
Q  203 aaactcactagtatactccaa 223  Q
    | |   |||||||||||||||    
T  47045667 ataacaactagtatactccaa 47045647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 13695431 - 13695503
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||||||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  13695431 gagaaaaccagagaagagtattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 13695503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 13699067 - 13699113
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13699067 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 13699113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 21301371 - 21301325
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21301371 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 21301325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 36357870 - 36357916
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36357870 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 36357916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 40002798 - 40002844
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40002798 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 40002844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 54346932 - 54346978
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  54346932 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 54346978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 9763843 - 9763771
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||||| | |||||||||||| |||||||    
T  9763843 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaataccaatcccgagctctctatttata 9763771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 41393512 - 41393584
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  41393512 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 41393584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 53797898 - 53797970
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| ||| |||||||||||| |||||||    
T  53797898 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgctaatcccgagctctctatttata 53797970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 8981823 - 8981777
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  8981823 catcaatggcgtaccctttcccaacaaaaataccattcttagtgatg 8981777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 13702945 - 13702991
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  13702945 catcagtggcgtaccctttcccaacaaaagtaccattcttagtgatg 13702991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 51019199 - 51019117
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggattt 102  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | ||||||||| |||| |||||||  ||||||||    
T  51019199 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggattt 51019117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 13710938 - 13711010
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||  |||||||||| |||||| | |||||||||||||| |||||||    
T  13710938 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 13711010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 47046132 - 47046060
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||  ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  47046132 gagaaaaccagagaagatgattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 47046060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 27711598 - 27711836
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711598 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 27711697  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711698 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 27711797  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||       |||||||||||||||||||    
T  27711798 agtatactccaagtttttttcattatacactagtgttcc 27711836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 37404238 - 37404026
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37404238 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgggctctcaatttataaggaggatttctactagag 37404139  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37404138 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 37404039  T
Q  212 agtatactccaag 224  Q
    |||||||||||||    
T  37404038 agtatactccaag 37404026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 37409357 - 37409145
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37409357 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttatactagag 37409258  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37409257 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 37409158  T
Q  212 agtatactccaag 224  Q
    |||||||||||||    
T  37409157 agtatactccaag 37409145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 36684474 - 36684270
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684474 gagaaaaccagagaagagtattcgattctcagttttggagtcaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 36684375  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684374 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 36684275  T
Q  220 ccaag 224  Q
    |||||    
T  36684274 ccaag 36684270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 34318043 - 34317840
Alignment:
Q  21 agaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatc 120  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34318043 agaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatc 34317944  T
Q  121 tacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317943 tacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactc 34317844  T
Q  221 caag 224  Q
    ||||    
T  34317843 caag 34317840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 27716718 - 27716930
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27716718 agagaggagagaaaaccagataagagtattcgattatcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 27716817  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  27716818 tgtgtgatctacccgatgtgggacataaaaatttcaattcacactttacactagtttctccatccttgtgcttacgttccaaaggctccacaaactcact 27716917  T
Q  212 agtatactccaag 224  Q
    |||||||||||||    
T  27716918 agtatactccaag 27716930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 11250943 - 11250731
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11250943 agagaggagagaaaaccagagaagagtattcgattctcaattttggagtaaagaatactattcacgagctctcaatttataaggaggatttctactagag 11250844  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11250843 tgtgtgatctaaccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagactccacaaactcact 11250744  T
Q  212 agtatactccaag 224  Q
     ||||||||||||    
T  11250743 ggtatactccaag 11250731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 5725365 - 5725512
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725365 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 5725464  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  5725465 aaaccaactagtatactccaagttttttccattatacactagtgttcc 5725512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 3585301 - 3585448
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3585301 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacattttacactagtttctccatccttgtgtttacattccaaaggctccac 3585400  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    ||||  ||||||||||||||||       || ||||||||||||||||    
T  3585401 aaaccaactagtatactccaagttttttccaatatacactagtgttcc 3585448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 5730771 - 5730917
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  5730771 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggtttcac 5730870  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttc 249  Q
    ||||  |||||||||||||||        ||||||||||||||||||    
T  5730871 aaaccaactagtatactccaaattttttccattatacactagtgttc 5730917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 48246119 - 48245998
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  48246119 ctactagagtgtgtgatctacccaatgtgggacataaaaattttaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 48246020  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  48246019 ataacaactagtatactccaag 48245998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 50959069 - 50959010
Alignment:
Q  165 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 224  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50959069 gtttctccattcttgtgtttacattccaaaggctccacaaactcactagtatactccaag 50959010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 27715000 - 27715046
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27715000 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 27715046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 5730374 - 5730446
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | | |||||||||||| |||||||    
T  5730374 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 5730446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 37405954 - 37405908
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  37405954 catcagtggcgtaccctttcccaacaaaattatcattcttagtgatg 37405908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 3584870 - 3584942
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | | ||| |||||||| |||||||    
T  3584870 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcctgagctctctatttata 3584942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 5728674 - 5728721
Alignment:
Q  254 catcagtggcgtaccctttcccaac-aaaaataccattcttagtgatg 300  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5728674 catcagtggcgtaccctttcccaacaaaaaatatcattcttagtgatg 5728721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 48246509 - 48246427
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggattt 102  Q
    |||||||||||| ||||| ||||||||||| |||||| ||| |||||| | ||| ||||| |||| |||||||  ||||||||    
T  48246509 gagaaaaccagagaagaggattcgattctcggttttgtagtgaagaatcccatttccgaggtctctatttatagagaggattt 48246427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 3838 - 4050
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3838 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 3937  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3938 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 4037  T
Q  212 agtatactccaag 224  Q
    |||||||||||||    
T  4038 agtatactccaag 4050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 2120 - 2166
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2120 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 2166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 33238338 - 33238568
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238338 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 33238437  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238438 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 33238537  T
Q  220 ccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||       |||||||||||||||||||    
T  33238538 ccaagtttttttcattatacactagtgttcc 33238568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 33243515 - 33243745
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33243515 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 33243614  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33243615 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatgccaaaggctccacaaactcactagtatact 33243714  T
Q  220 ccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||       |||||||||||||||||||    
T  33243715 ccaagtttttttcattatacactagtgttcc 33243745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 47994136 - 47994340
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994136 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 47994235  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994236 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 47994335  T
Q  220 ccaag 224  Q
    |||||    
T  47994336 ccaag 47994340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 47999311 - 47999515
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47999311 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 47999410  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  47999411 ctacccgatgtgagacataaaattttcaattcacactttacactagtttctccatccttatgtttacattccaaaggctccacaaactcactaatatact 47999510  T
Q  220 ccaag 224  Q
    |||||    
T  47999511 ccaag 47999515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 21080468 - 21080321
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21080468 ctactagagtgtgtgatctacccaacgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 21080369  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  21080368 aaaccaactagtatactccaagttttttccattatacactagtgttcc 21080321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 2234099 - 2233978
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2234099 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 2234000  T
Q  203 aaactcactagtatactccaag 224  Q
    ||||  ||||||||||||||||    
T  2233999 aaaccaactagtatactccaag 2233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 32212112 - 32211965
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  32212112 ctactagagtgtgtgatctacccaatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagtctcaac 32212013  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  32212012 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 32211965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 42572600 - 42572747
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  42572600 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 42572699  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  42572700 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 42572747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 17496100 - 17496221
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17496100 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17496199  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  17496200 ataacaactagtatactccaag 17496221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 17557114 - 17556993
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17557114 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17557015  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  17557014 ataacaactagtatactccaag 17556993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 12935084 - 12935231
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  12935084 ctactaaagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 12935183  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  12935184 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 12935231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 19309023 - 19308876
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  19309023 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 19308924  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  19308923 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 19308876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 47176643 - 47176496
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  47176643 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 47176544  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  47176543 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 47176496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 16538813 - 16538699
Alignment:
Q  110 agtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 209  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16538813 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16538714  T
Q  210 ctagtatactccaag 224  Q
    |||||||||||||||    
T  16538713 ctagtatactccaag 16538699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 16626849 - 16626963
Alignment:
Q  110 agtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 209  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16626849 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16626948  T
Q  210 ctagtatactccaag 224  Q
    |||||||||||||||    
T  16626949 ctagtatactccaag 16626963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 43893542 - 43893689
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| | |||| |    
T  43893542 ctactagagtgtgtgatctacccaatgagggacataaaattttcaattcacactttacgctagtttctacatcattgtgtttacattccaatgtctcctc 43893641  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  43893642 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 43893689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 47544828 - 47544749
Alignment:
Q  171 ccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||    
T  47544828 ccatccttgtgtttacattccaaaggctccacaaactctctagtatactccaagtttttttcattatacactagtgttcc 47544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 2234456 - 2234384
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||||||| |||||||||||| |||||||    
T  2234456 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatactaatcccgagctctctatttata 2234384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 33241732 - 33241778
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33241732 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 33241778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 47997529 - 47997575
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  47997529 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 47997575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 12934666 - 12934738
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  12934666 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 12934738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 17495672 - 17495744
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| |||| |||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  17495672 gagaaaaccagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttata 17495744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 17557542 - 17557470
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| |||| |||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  17557542 gagaaaaccagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttata 17557470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 19309437 - 19309365
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||| ||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  19309437 gagaaaaccagagaagaggatttgattctcggttttggagtgaagaatcccattcccgagctctctatttata 19309365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21080865 - 21080793
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| |||||||||||||||||| ||| |||||| | | |||||||||||| |||||||    
T  21080865 gagaaaaccagagaagaggattcgattctcagttttgaagtgaagaatgcaaatcccgagctctctatttata 21080793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 42572214 - 42572286
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | ||||||||| |||| |||||||    
T  42572214 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagttctctatttata 42572286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 43893138 - 43893210
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| |||||||||||  ||||||||| |||||| | |||||||||||||| |||||||    
T  43893138 gagaaaaccagagaagaggattcgattctcgattttggagtgaagaatcccattcccgagctctctatttata 43893210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 16539238 - 16539166
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| |||  |||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  16539238 gagaaaaccagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttata 16539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 16626424 - 16626496
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| |||  |||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  16626424 gagaaaaccagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttata 16626496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 47176976 - 47176904
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| |||||||| || |||||||||| ||||||   |||||||||||||| |||||||    
T  47176976 gagaaaaccagagaagaggattcgattatcggttttggagtgaagaatctcattcccgagctctctatttata 47176904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 32212479 - 32212419
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagc 80  Q
    ||||||| |||| ||||| ||||||||||| |||||||||| |||||| | ||||||||||    
T  32212479 gagaaaatcagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagc 32212419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 31881 - 32085
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31881 gagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 31980  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31981 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 32080  T
Q  220 ccaag 224  Q
    |||||    
T  32081 ccaag 32085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 26709 - 26913
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26709 gagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 26808  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26809 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttttgtttacattccaaaggctccacaaactcactagtatact 26908  T
Q  220 ccaag 224  Q
    |||||    
T  26909 ccaag 26913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 30102 - 30148
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30102 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 30148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 55129065 - 55129276
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55129065 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 55129164  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55129165 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat-cttgtgtttacattccaaaggctccacaaactcact 55129263  T
Q  212 agtatactccaag 224  Q
    |||||||||||||    
T  55129264 agtatactccaag 55129276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 17368994 - 17369199
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17368994 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 17369093  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  17369094 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaaccaact 17369193  T
Q  212 agtata 217  Q
    ||||||    
T  17369194 agtata 17369199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 20090421 - 20090191
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20090421 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 20090322  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  20090321 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatcctgatgtttacatgccaaaggctccacaaactcactagtatact 20090222  T
Q  220 ccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||       |||||||||||||||||||    
T  20090221 ccaagtttttttcattatacactagtgttcc 20090191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 20095546 - 20095316
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20095546 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 20095447  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  20095446 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatcctgatgtttacatgccaaaggctccacaaactcactagtatact 20095347  T
Q  220 ccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||       |||||||||||||||||||    
T  20095346 ccaagtttttttcattatacactagtgttcc 20095316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 15762789 - 15762585
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15762789 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 15762690  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15762689 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 15762590  T
Q  220 ccaag 224  Q
    |||||    
T  15762589 ccaag 15762585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 15767950 - 15767746
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15767950 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 15767851  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15767850 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 15767751  T
Q  220 ccaag 224  Q
    |||||    
T  15767750 ccaag 15767746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 3481796 - 3481649
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3481796 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 3481697  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    ||||||||||||||||||||||       |||||||||||||||||||    
T  3481696 aaactcactagtatactccaagtttttttcattatacactagtgttcc 3481649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 34128558 - 34128437
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34128558 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 34128459  T
Q  203 aaactcactagtatactccaag 224  Q
    |||   ||||||||||||||||    
T  34128458 aaatcaactagtatactccaag 34128437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 17358566 - 17358686
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17358566 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacacta-tttctccatccttgtgtttacattccaaaggctccac 17358664  T
Q  203 aaactcactagtatactccaag 224  Q
    ||||  ||||||||| ||||||    
T  17358665 aaaccaactagtataatccaag 17358686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 30338247 - 30338126
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30338247 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactaatttctccatccttgtgtttacattccaaaggctccac 30338148  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  30338147 ataacaactagtatactccaag 30338126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 30341351 - 30341204
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30341351 ctactagagtgtgtgatctacctaatgtgggccataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 30341252  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  30341251 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 30341204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 54271312 - 54271433
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54271312 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttagactagtttctccatccttgtgtttacattccaaaggctccac 54271411  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||| ||||    
T  54271412 ataacaactagtatacttcaag 54271433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 3476339 - 3476249
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 193  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  3476339 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaa 3476249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 4117097 - 4117007
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 193  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  4117097 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatcattgtgtttacattccaa 4117007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 3482238 - 3482166
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  3482238 gagaaaaccagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 3482166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 3478485 - 3478439
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3478485 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 3478439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 15764557 - 15764511
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15764557 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15764511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 17362634 - 17362680
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17362634 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17362680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 17367276 - 17367322
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17367276 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17367322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 20092188 - 20092142
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20092188 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 20092142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 17358107 - 17358179
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| |||||||||||||||||||||| |||||| | | |||||||||||| |||||||    
T  17358107 gagaaaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 17358179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 54270914 - 54270986
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  54270914 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 54270986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 4117417 - 4117345
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| | ||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  4117417 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 4117345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 30338578 - 30338506
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | | |||||||||||| |||||||    
T  30338578 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaaatcccgagctctctatttata 30338506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 34128995 - 34128923
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| |||||||||||||||||||||| |||||| | | |||||| ||||| |||||||    
T  34128995 gagaaaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgacctctctatttata 34128923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 3476771 - 3476699
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||   ||||||||| |||||| | |||||||||||||| |||||||    
T  3476771 gagaaaaccagagaagaggattcgattcttgtttttggagtgaagaatcccattcccgagctctctatttata 3476699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 10321712 - 10321784
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    ||||||||| || ||||| |||| |||||| |||||||||| |||||| | | |||||||||||| |||||||    
T  10321712 gagaaaacctgagaagaggattcaattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 10321784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 40392594 - 40392832
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    ||||||||||||||| |||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40392594 agagaggagagaaaatcagagaaaagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 40392693  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  40392694 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacattgcaaaggctccacaaactcact 40392793  T
Q  212 agtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||       |||||||||||||||||||    
T  40392794 agtatactccaagtttttttcattatacactagtgttcc 40392832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 42728379 - 42728175
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42728379 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 42728280  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42728279 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaact 42728180  T
Q  220 ccaag 224  Q
    |||||    
T  42728179 ccaag 42728175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 44096638 - 44096842
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44096638 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 44096737  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  44096738 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttttgtttacattccaaatgctccacaaactcactagtatact 44096837  T
Q  220 ccaag 224  Q
    |||||    
T  44096838 ccaag 44096842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 42723210 - 42723007
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42723210 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 42723111  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42723110 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaact 42723011  T
Q  220 ccaa 223  Q
    ||||    
T  42723010 ccaa 42723007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 44754352 - 44754161
Alignment:
Q  33 aagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 132  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44754352 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 44754253  T
Q  133 gacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44754252 gacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44754161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 44759518 - 44759327
Alignment:
Q  33 aagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 132  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44759518 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 44759419  T
Q  133 gacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 224  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44759418 gacataaaattttcaattcacactttacactaatttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44759327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 40518292 - 40518075
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttat----aaggaggatttctact 107  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    ||||||||||||||||    
T  40518292 agagaggagagaaaacaagagaagagtattcgattctcagttttggagtgaagaatactattcacgagctctcaatttattaataaggaggatttctact 40518193  T
Q  108 agagtgtgtgatctaccc-gatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40518192 agagtgtgtgatctaccccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttatattccaaaggctccacaaac 40518093  T
Q  207 tcactagtatactccaag 224  Q
    |||||| |||||||||||    
T  40518092 tcactattatactccaag 40518075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 40519929 - 40520122
Alignment:
Q  33 aagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttat----aaggaggatttctactagagtgtgtgatctaccc-ga 127  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||    
T  40519929 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttattcataaggaggatttctactagagtgtgtgatctaccccga 40520028  T
Q  128 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40520029 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcc 40520122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 4163042 - 4162895
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4163042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 4162943  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    ||||  ||||||||||||||||       |||||||||| ||||||||    
T  4162942 aaaccaactagtatactccaagttttttccattatacaccagtgttcc 4162895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 28751168 - 28751021
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28751168 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 28751069  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  28751068 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 28751021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 42724986 - 42724940
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42724986 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 42724940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 44756138 - 44756092
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44756138 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 44756092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 4163403 - 4163331
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | | |||||||||||| |||||||    
T  4163403 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 4163331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 28751555 - 28751483
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| | ||||| ||||||||||| |||||||||| ||||||   |||||||||||||| |||||||    
T  28751555 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttata 28751483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 3360 - 3564
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3360 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 3459  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3460 ctaccggatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 3559  T
Q  220 ccaag 224  Q
    |||||    
T  3560 ccaag 3564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 81175 - 80971
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81175 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 81076  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81075 ctaccggatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 80976  T
Q  220 ccaag 224  Q
    |||||    
T  80975 ccaag 80971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 32010862 - 32011066
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32010862 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtatgat 32010961  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32010962 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 32011061  T
Q  220 ccaag 224  Q
    |||||    
T  32011062 ccaag 32011066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 32016036 - 32016240
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016036 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 32016135  T
Q  120 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32016136 ctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaattcactagtatact 32016235  T
Q  220 ccaag 224  Q
    |||||    
T  32016236 ccaag 32016240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 2165633 - 2165394
Alignment:
Q  12 agagaggagagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    ||||| |||||||||| ||| ||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2165633 agagatgagagaaaactagagaagagcatttgattctcaattttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 2165534  T
Q  112 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatt-ccaaaggctccacaaactcac 210  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  2165533 tgtgtgatctacccgatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattcccaaagactccacaaactcac 2165434  T
Q  211 tagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||||||||||||        |||||||||||||||||||    
T  2165433 tagtatactccaaaattttttcattatacactagtgttcc 2165394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 43998693 - 43998546
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43998693 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatttcaaaggctccac 43998594  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  43998593 aaaccaactagtatactccaagtttttttcattatacactagtgttcc 43998546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 17955281 - 17955134
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17955281 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacacttcacactagtttctccatccttgtgtttacattccaaaggctccac 17955182  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    |||   |||||||||||| |||       |||||||||||||||||||    
T  17955181 aaaacaactagtatactctaagtcttttccattatacactagtgttcc 17955134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 24885324 - 24885445
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  24885324 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 24885423  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  24885424 ataacaactagtatactccaag 24885445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 42513995 - 42513848
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||    
T  42513995 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactattttctacatccttgtgtttacattccaatgtctccac 42513896  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  42513895 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 42513848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 21641273 - 21641184
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 193  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||    
T  21641273 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactag-atctacatccttgtatttacattccaa 21641184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 21645620 - 21645574
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21645620 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 21645574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 24884982 - 24885064
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggattt 102  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||  ||||||||    
T  24884982 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaattccattcccgagctctctatttatagagaggattt 24885064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 32014255 - 32014301
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32014255 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 32014301  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21643907 - 21643835
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | ||||||||| |||| |||||||    
T  21643907 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643835  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21643092 - 21643020
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| | ||||| ||||||||||| |||||||||| |||||| | ||||||||| |||| |||||||    
T  21643092 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643020  T

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Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21643467 - 21643395
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| | ||||| ||||||||||| |||||||||| |||||| | ||||||||| |||| |||||||    
T  21643467 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643395  T

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Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 43999056 - 43998984
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    ||||||| |||| ||||| ||||||||||||||||| |||||||||||   | |||||||||||| |||||||    
T  43999056 gagaaaatcagagaagaggattcgattctcagttttagagtaaagaatgtaaatcccgagctctctatttata 43998984  T

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Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 42514245 - 42514182
Alignment:
Q  21 agaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctc 84  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||||||   ||||||||||||||    
T  42514245 agaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctc 42514182  T

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Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21641592 - 21641520
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| | ||||| |||||||||||  ||||||||| |||||| | ||||||||| |||| |||||||    
T  21641592 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21641520  T

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Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21641967 - 21641895
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| | ||||| |||||||||||  ||||||||| |||||| | ||||||||| |||| |||||||    
T  21641967 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21641895  T

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Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21642342 - 21642270
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| | ||||| |||||||||||  ||||||||| |||||| | ||||||||| |||| |||||||    
T  21642342 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21642270  T

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Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21642717 - 21642645
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| | ||||| |||||||||||  ||||||||| |||||| | ||||||||| |||| |||||||    
T  21642717 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21642645  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 19434003 - 19434043
Alignment:
Q  256 tcagtggcgtaccctttcccaacaaaaataccattcttagt 296  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19434003 tcagtggcgtaccctttcccaacaaaaaccccatccttagt 19434043  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 19570152 - 19570192
Alignment:
Q  256 tcagtggcgtaccctttcccaacaaaaataccattcttagt 296  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19570152 tcagtggcgtaccctttcccaacaaaaaccccatccttagt 19570192  T

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Target: scaffold0594 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 8681 - 8534
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8681 ctactagagtgtgtgatctacccaatgtgggacataaaattttaaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 8582  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  8581 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 8534  T

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Target: scaffold0594; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 9034 - 8962
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||| ||| ||||| |||||||||||  ||||||||| |||||| | |||||||||||||| |||||||    
T  9034 gagaaaactagagaagaggattcgattctcgtttttggagtgaagaatcccattcccgagctctctatttata 8962  T

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Target: scaffold0166 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 13133 - 12986
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13133 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13034  T
Q  203 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 250  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13033 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 12986  T

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Target: scaffold0166; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 18590 - 18500
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 193  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  18590 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 18500  T

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Target: scaffold0166; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 19018 - 18946
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| | ||| |||||||| |||||||    
T  19018 gagaaaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttata 18946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 15279 - 15233
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15279 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 13565 - 13493
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||  |||||||||| |||||| | |||||||||||||| |||||||    
T  13565 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 13493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 37654 - 37712
Alignment:
Q  103 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttaca 161  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37654 ctactggagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttaca 37712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 37279 - 37361
Alignment:
Q  20 gagaaaaccagataagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggattt 102  Q
    |||||||||||| ||||| ||||||||||| |||||||||| ||||||   |||||||||||||| |||||||  ||||||||    
T  37279 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttatagagaggattt 37361  T

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Target: scaffold0165 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 15542 - 15588
Alignment:
Q  254 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15542 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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