View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11195_high_3 (Length: 616)
Name: NF11195_high_3
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11195_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 17 - 601
Target Start/End: Complemental strand, 50751817 - 50751233
Alignment:
| Q |
17 |
attagaacatataggaatcctataagagattcacatgatcacatacataccgccgagtctaatattgtttgtgtttttggtaaacttggtctcccaagca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50751817 |
attagaacatataggaatcctataagagattcacatgatcacatacataccgccgagtctaatattgtttgtgtttttggtaaacttggtctcccaagca |
50751718 |
T |
|
| Q |
117 |
ttatcggtttatcacaaaggttatattaacgatagcgactatatggtggatatgcactctacacatnnnnnnngggatttaattgccggtccgtatgatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
50751717 |
ttatcggtttatcacaaaggttatattaacgatagcgactatatggtggatatgcactctacacataaaaaaagggatttaattgccggtccgtatgatt |
50751618 |
T |
|
| Q |
217 |
tcacctaacctgaaaagtcatggcccnnnnnnnnncttcccacttgttagtacatagtacatattctttgcataattggaagtgaaagaaaatagaaaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50751617 |
tcacctaacctgaaaagtcatggccctttttttttcttcccacttgttagtacatagtacatattctttgcataattggaagtgaaagaaaatagaaaca |
50751518 |
T |
|
| Q |
317 |
gtaccatgtggtgttgacccaaatttggggccgtctagttgtagtatatgagggcaatgattgttgtgtgacttgaaagttgaaacatatgggaccttgt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50751517 |
gtaccatgtggtgttgacccaaatttggggccgtctagttgtagtatatgagggcaatgattgttgtgtgacttgaaagttgaaacatatgggaccttgt |
50751418 |
T |
|
| Q |
417 |
tttccagtaattcacatccgaatttatgacggaaaataatgtatcattttgcctaggtgtttttctttgtggattggtatatcttgattcttgacaggtg |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50751417 |
tttccagtaattcacatccgaatttatgacggaaaataatgtatcattttgcctaggtgtttttctttgtggattggtatatcttgattcttgacaggtg |
50751318 |
T |
|
| Q |
517 |
tgatttttgaaagattattaataggataaaagtagctctcgtaaaatataaatgtatggaccatcaaactgaacttttccttctt |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50751317 |
tgatttttgaaagattattaataggataaaagtagctctcgtaaaatataaatgtatggaccatcaaactgaaattttccttctt |
50751233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University