View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11195_high_4 (Length: 516)

Name: NF11195_high_4
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11195_high_4
NF11195_high_4
[»] chr2 (33 HSPs)
chr2 (19-501)||(9321504-9321986)
chr2 (212-428)||(10372588-10372804)
chr2 (213-435)||(9292638-9292857)
chr2 (325-501)||(9329418-9329598)
chr2 (236-482)||(9060271-9060517)
chr2 (22-480)||(9316559-9316999)
chr2 (277-482)||(8572675-8572879)
chr2 (22-237)||(9329130-9329339)
chr2 (22-167)||(10353652-10353797)
chr2 (262-435)||(10353901-10354074)
chr2 (318-435)||(10336623-10336740)
chr2 (323-435)||(10348620-10348732)
chr2 (326-435)||(12018134-12018243)
chr2 (22-167)||(9357711-9357856)
chr2 (26-167)||(10348317-10348458)
chr2 (322-435)||(7114865-7114978)
chr2 (318-435)||(9275335-9275452)
chr2 (318-435)||(9283394-9283511)
chr2 (318-435)||(12005385-12005502)
chr2 (277-402)||(14551091-14551215)
chr2 (325-424)||(9357935-9358034)
chr2 (326-435)||(12011813-12011922)
chr2 (326-435)||(7612716-7612825)
chr2 (22-228)||(9283589-9283789)
chr2 (326-405)||(9365415-9365494)
chr2 (26-174)||(10372396-10372544)
chr2 (373-432)||(8578748-8578807)
chr2 (53-173)||(7115100-7115220)
chr2 (22-172)||(9292459-9292609)
chr2 (26-167)||(8572959-8573100)
chr2 (330-435)||(11986745-11986850)
chr2 (26-174)||(9275056-9275204)
chr2 (335-435)||(17565334-17565434)
[»] chr3 (2 HSPs)
chr3 (41-435)||(37463048-37463451)
chr3 (361-435)||(39428733-39428807)
[»] scaffold0667 (2 HSPs)
scaffold0667 (308-435)||(5261-5388)
scaffold0667 (26-168)||(5012-5154)
[»] chr4 (3 HSPs)
chr4 (262-435)||(26575635-26575808)
chr4 (22-167)||(26575404-26575549)
chr4 (318-402)||(561982-562066)
[»] chr8 (1 HSPs)
chr8 (304-435)||(41965942-41966073)
[»] chr1 (2 HSPs)
chr1 (293-420)||(29452586-29452713)
chr1 (277-420)||(29467060-29467203)
[»] chr5 (1 HSPs)
chr5 (327-435)||(36225571-36225679)


Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 19 - 501
Target Start/End: Original strand, 9321504 - 9321986
Alignment:
Q  19 gtcagggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321504 gtcagggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagcc 9321603  T
Q  119 agttggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatggttctggttctattacgtgtgacaggagtgatgttggtggtgaaag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9321604 agttggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatggttctggttctattacgtgtgacaggagtgattttggtggtgaaag 9321703  T
Q  219 gatggttgagtggaatcatcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgact 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321704 gatggttgagtggaatcatcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgact 9321803  T
Q  319 gagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggt 418  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321804 gagggaatttttgagatgaaggttgatgaagtggtgagaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggt 9321903  T
Q  419 aagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattggaaggaaggttcgttctagggttctgtg 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9321904 aagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattggaaggaaggttcgttctagggttgtgtg 9321986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 212 - 428
Target Start/End: Original strand, 10372588 - 10372804
Alignment:
Q  212 gtgaaaggatggttgagtggaatcatcatggatttagagaaatcatcatgatc---atcgatttggagttggtagagatcgaatttgtgttgaatgatta 308  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||||| |||   ||||||||||||||||||||||||||||||| |||||| |||||    
T  10372588 gtgaaaggatggttgagtggaatcctc---gatttagagaaatcatcatcatcgtcatcgatttggagttggtagagatcgaatttgcgttgaaggatta 10372684  T
Q  309 aggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtga 408  Q
    |||||||| |||||||||||| ||| |||||||||||||| | ||| ||||||||||  ||||||| |||||| ||||||||||||||| ||||||||||    
T  10372685 aggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggagaagtga 10372784  T
Q  409 ttttaccggtaagcgggaga 428  Q
    ||||||||||||||||||||    
T  10372785 ttttaccggtaagcgggaga 10372804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 213 - 435
Target Start/End: Original strand, 9292638 - 9292857
Alignment:
Q  213 tgaaaggatggttgagtggaatcatcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaagga 312  Q
    |||||||||||||||||||||| |||   || || ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  9292638 tgaaaggatggttgagtggaataatc---gacttggagaaatcatcatcatcatcgatttggagttggtagagatcgaatttgtgtcgaaggattaagga 9292734  T
Q  313 tcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgatttt 412  Q
    |||  |||||||||||||||| ||||||||  |||||  ||| |||||||||| ||||||||||||||| ||| |||||||||||  |||||||||||||    
T  9292735 tcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgatttt 9292834  T
Q  413 accggtaagcgggagaggatttc 435  Q
    || |||| |||||||| ||||||    
T  9292835 actggtacgcgggagaagatttc 9292857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 325 - 501
Target Start/End: Original strand, 9329418 - 9329598
Alignment:
Q  325 atttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 424  Q
    ||||||||| ||||||||  |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  9329418 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 9329517  T
Q  425 gagaggatttcctccaacaattccggcggaggaacatcactcgccatt----ggaaggaaggttcgttctagggttctgtg 501  Q
    ||||||||||||   |||||||||||| || ||||||||| |||||||    |||||||||||||||||||||||| ||||    
T  9329518 gagaggatttccgttaacaattccggcagaagaacatcacccgccattggaaggaaggaaggttcgttctagggttgtgtg 9329598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 236 - 482
Target Start/End: Complemental strand, 9060517 - 9060271
Alignment:
Q  236 atcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatt---tttga 332  Q
    ||||| |||||||||||||||||||   |||||| ||||||||||||||||||| |||||||| ||| |||||   ||||| |||||| |||   |||||    
T  9060517 atcattgatttagagaaatcatcat---catcgacttggagttggtagagatcggatttgtgtcgaaggattataaatcgattgaggggattatttttga 9060421  T
Q  333 gatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggat 432  Q
    | | ||||||  |||||| ||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||| |||    
T  9060420 ggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgggagaagat 9060321  T
Q  433 ttcctccaacaattccggcggaggaacatcactcgccattggaaggaagg 482  Q
    |||  | |  | |||||||||| ||||||||  |||||||||||||||||    
T  9060320 ttcggcaagtatttccggcggaagaacatcagccgccattggaaggaagg 9060271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 22 - 480
Target Start/End: Original strand, 9316559 - 9316999
Alignment:
Q  22 agggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagt 121  Q
    |||||||| |||||| ||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||| |  || ||||||  ||||||| | |    
T  9316559 agggatagcaagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcatgaaagcgatt 9316658  T
Q  122 tggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatggttctggttctattacgtgtgacaggagtgatgttggtggtgaaaggat 221  Q
    || || | ||| |||||||| ||||||||||| ||||||| |||||||||  | |||      |||   ||||||||||        ||| |||||||||    
T  9316659 tgaccattggaaatggcgagaaggccgttacatgaaccgagaagagccattatgctg------ttatacgtgacaggag------ctgtgttgaaaggat 9316746  T
Q  222 ggttgagtggaatcatcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgag 321  Q
    |||||||||||   ||||||||||| |  |  |||     |||||||||||||      ||||| ||| ||||||  |||| ||||||||||||| ||||    
T  9316747 ggttgagtgga---atcatggatttcgttaggtcagggaaatcatcgatttgg------tagagttcggatttgtaatgaaggattaaggatcgattgag 9316837  T
Q  322 gga---atttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggt 418  Q
    |||   ||||||||| |||||||||||||||| ||| ||||| ||||  |||||||||||||| ||||||||||||||| |||||||||||||||| |||    
T  9316838 ggaattatttttgaggtgaaggttgatgaagttgtgagaatctattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattttactggt 9316937  T
Q  419 aagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattggaaggaa 480  Q
    ||| |||||| ||||||  | |  | |||||||||| || | |||  |||||||||||||||    
T  9316938 aagtgggagaagatttcggcgagtatttccggcggaagaccgtcagccgccattggaaggaa 9316999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 277 - 482
Target Start/End: Complemental strand, 8572879 - 8572675
Alignment:
Q  277 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 376  Q
    |||||||| |||| | ||| || ||||||||||||| ||| |||||||||||||||| ||||||||| |||||| ||| ||||||||||| |||||||||    
T  8572879 ttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagt 8572780  T
Q  377 gatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattggaa 476  Q
    ||||| ||||||||||||||| |||||||||| ||||| |||| |||||||| ||||||    |  | ||||| |||| ||||||||| |||||||||||    
T  8572779 gattttgaagttgatcggaatcggagaagtga-tttactggtatgcgggagaagatttcagtgactatttccgacggaagaacatcacccgccattggaa 8572681  T
Q  477 ggaagg 482  Q
    ||||||    
T  8572680 ggaagg 8572675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 9329130 - 9329339
Alignment:
Q  22 agggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagt 121  Q
    |||||||| |||||||||||||||||| |||||||| ||||| ||| |||||||||||||||||||||||||||||  |||||| |   | ||||| | |    
T  9329130 agggatagcaagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaagcgatt 9329229  T
Q  122 tggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatggttctggttctattacgtgtgacaggagtgatgttggtggtgaaaggat 221  Q
    ||||| | |||||| || | ||||||||| || |||||||||||| ||||| | |||      ||||| ||||||||||  ||||||||| |||||||||    
T  9329230 tggccataggagatagcaatgaggccgttgcatgaaccgataagacccatgttgctg------ttacgcgtgacaggagcaatgttggtgctgaaaggat 9329323  T
Q  222 ggttgagtggaatcat 237  Q
    ||||||||||||||||    
T  9329324 ggttgagtggaatcat 9329339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 10353652 - 10353797
Alignment:
Q  22 agggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagt 121  Q
    ||||||||||||||| || |||||||| || ||||||||||| ||| | |||||||| ||||||||||||||||||  |||||||||  ||||||| | |    
T  10353652 agggataggaagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaaagctatt 10353751  T
Q  122 tggccgtgggagatggcgaggaggccgttacaggaaccgataagag 167  Q
      ||||||||| |||||||||||||||||||| |||||||||||||    
T  10353752 acgccgtgggacatggcgaggaggccgttacatgaaccgataagag 10353797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 262 - 435
Target Start/End: Original strand, 10353901 - 10354074
Alignment:
Q  262 atcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcg 361  Q
    |||||||||||  | |||||||| ||||||||||  | |||  ||||||||| || || |||||||| |||| |||||||||||||| | ||  ||||||    
T  10353901 atcatcgattttaatttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcg 10354000  T
Q  362 attatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 435  Q
    |||| |||||||| |||||| |||||||||||||||  |||||||||| |||||||||||||||| ||||||||    
T  10354001 attagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttc 10354074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 318 - 435
Target Start/End: Original strand, 10336623 - 10336740
Alignment:
Q  318 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 417  Q
    ||||||||||||  || |||||||||||||| | ||| |||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  10336623 tgagggaattttgaaggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccgg 10336722  T
Q  418 taagcgggagaggatttc 435  Q
    ||| ||||||| ||||||    
T  10336723 taaacgggagaagatttc 10336740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 323 - 435
Target Start/End: Original strand, 10348620 - 10348732
Alignment:
Q  323 gaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 422  Q
    |||||||| || |||||||||||||| | | | |||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  10348620 gaattttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 10348719  T
Q  423 gggagaggatttc 435  Q
    |||||| ||||||    
T  10348720 gggagaagatttc 10348732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 326 - 435
Target Start/End: Complemental strand, 12018243 - 12018134
Alignment:
Q  326 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 425  Q
    |||||||| ||||| ||| |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||| ||||||||||    
T  12018243 tttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcggg 12018144  T
Q  426 agaggatttc 435  Q
    ||| ||||||    
T  12018143 agaagatttc 12018134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 9357711 - 9357856
Alignment:
Q  22 agggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagt 121  Q
    ||||||||||||||| ||||||||||| ||  |||| |||||  || || |||||||||||| ||||||||||| |  |||||||||  ||||||| | |    
T  9357711 agggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatt 9357810  T
Q  122 tggccgtgggagatggcgaggaggccgttacaggaaccgataagag 167  Q
    | ||| | |||||||||||||||||||||||| |||||||||||||    
T  9357811 tcgccattggagatggcgaggaggccgttacatgaaccgataagag 9357856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 10348317 - 10348458
Alignment:
Q  26 ataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagttggc 125  Q
    ||||||||||| || |||||||| ||  |||| ||||| ||| |||||||||||||||||||||||||| |||||||||||||  ||||| | | ||  |    
T  10348317 ataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacga-ttacc 10348415  T
Q  126 cgtg-ggagatggcgaggaggccgttacaggaaccgataagag 167  Q
    | || |||||||||||||||||||||||| |||||||||||||    
T  10348416 cctgtggagatggcgaggaggccgttacatgaaccgataagag 10348458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 322 - 435
Target Start/End: Complemental strand, 7114978 - 7114865
Alignment:
Q  322 ggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaag 421  Q
    ||||||||| ||||||||||||||||| | ||| |||||||||| ||||||||||||||| ||||||||||||||| | |||||||||  ||| |||| |    
T  7114978 ggaatttttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtagg 7114879  T
Q  422 cgggagaggatttc 435  Q
    || |||| ||||||    
T  7114878 cgagagaagatttc 7114865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 318 - 435
Target Start/End: Original strand, 9275335 - 9275452
Alignment:
Q  318 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 417  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| || |  |||||||||||||| ||  |||||||||||  ||||||||||| ||| ||    
T  9275335 tgagggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactgg 9275434  T
Q  418 taagcgggagaggatttc 435  Q
    ||| ||||||| ||||||    
T  9275435 taaccgggagaagatttc 9275452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 318 - 435
Target Start/End: Complemental strand, 9283511 - 9283394
Alignment:
Q  318 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 417  Q
    |||||||| ||||||| |||||||||||||| | ||| ||||| |||| ||||  ||||||||||||||||||||||||| |||| |||||||| || ||    
T  9283511 tgagggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactgg 9283412  T
Q  418 taagcgggagaggatttc 435  Q
    ||||| ||||| ||||||    
T  9283411 taagcaggagaagatttc 9283394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 318 - 435
Target Start/End: Complemental strand, 12005502 - 12005385
Alignment:
Q  318 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 417  Q
    |||| |||||||| |||||||||||| |||||| ||| |||||||||||||||||||| ||||  |||||||| |||||| |||||||||||| |   ||    
T  12005502 tgagagaattttttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggagg 12005403  T
Q  418 taagcgggagaggatttc 435  Q
    ||||||||||| ||||||    
T  12005402 taagcgggagaagatttc 12005385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 277 - 402
Target Start/End: Original strand, 14551091 - 14551215
Alignment:
Q  277 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 376  Q
    ||||||||||| | | |||||| ||| ||||||||| | | ||||||||||||| || ||||| |||||||||| ||| |||||||||| ||||| ||||    
T  14551091 ttggtagagattggacttgtgtcgaaggattaaggaacaattgagggaattttt-aggtgaagtttgatgaagttgtgggaatcgattagggattgaagt 14551189  T
Q  377 gatttagaagttgatcggaattggag 402  Q
    ||||| ||||||||||||||||||||    
T  14551190 gattttgaagttgatcggaattggag 14551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 325 - 424
Target Start/End: Original strand, 9357935 - 9358034
Alignment:
Q  325 atttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 424  Q
    ||||||||| |||||||| ||||||| ||| |||||||||| ||||||||||||||| ||||||||||  ||  |||||||||||||||| |||||||||    
T  9357935 atttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 9358034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 326 - 435
Target Start/End: Complemental strand, 12011922 - 12011813
Alignment:
Q  326 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 425  Q
    |||||||| ||||| ||| |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |    |||||||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcggg 12011823  T
Q  426 agaggatttc 435  Q
    ||| ||||||    
T  12011822 agaagatttc 12011813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 435
Target Start/End: Original strand, 7612716 - 7612825
Alignment:
Q  326 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 425  Q
    |||||||| ||||||||  |||||| ||| ||||| |||| ||||||||| ||||||||| ||||||||||| |||| || | || |||||||||||| |    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgag 7612815  T
Q  426 agaggatttc 435  Q
    ||||||||||    
T  7612816 agaggatttc 7612825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 9283789 - 9283589
Alignment:
Q  22 agggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagt 121  Q
    ||||||||||||||| || |||||||| || | ||| ||||| ||| ||| ||||||||||||||||||  | | || ||| |||||  | ||||| | |    
T  9283789 agggataggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttcagttgcgtcgtttggatgcgtaaaagcaatt 9283690  T
Q  122 tggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatggttctggttctattacgtgtgacaggagtgatgttggtggtgaaaggat 221  Q
     |||| | | |||||||||||||||||||||| ||||| ||||||||| || | |||      ||| | |||| ||||  ||||||||||||||||||||    
T  9283689 gggccattgtagatggcgaggaggccgttacatgaaccaataagagccttgatgctg------ttaagcgtgaaaggatcgatgttggtggtgaaaggat 9283596  T
Q  222 ggttgag 228  Q
    |||||||    
T  9283595 ggttgag 9283589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 405
Target Start/End: Original strand, 9365415 - 9365494
Alignment:
Q  326 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaag 405  Q
    ||||||||||| |||||| |||||  ||| |||||||||||||||||||||||||| || |||||||||||| |||||||    
T  9365415 tttttgagatggaggttggtgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 10372396 - 10372544
Alignment:
Q  26 ataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagttggc 125  Q
    ||||||||||| || |||||||| |  | ||| ||||| ||| |||||||||||| ||||||||| |||||||    ||| | | ||||||| | || ||    
T  10372396 ataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattggggtcacaagggttaatgaaagcgaatttgc 10372495  T
Q  126 cgtgggagatggcgaggaggccgttacaggaaccgataagagccatggt 174  Q
    ||| | |||||||||||||||||||||| ||||||||| ||| ||||||    
T  10372496 cgttgcagatggcgaggaggccgttacatgaaccgatacgagtcatggt 10372544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 373 - 432
Target Start/End: Complemental strand, 8578807 - 8578748
Alignment:
Q  373 aagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggat 432  Q
    ||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||    
T  8578807 aagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcgggagaggat 8578748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 7115220 - 7115100
Alignment:
Q  53 cgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagttggccgtgggagatggcgaggaggccgttac 152  Q
    ||||| ||||| ||| ||| ||||||||||||||||||  | | ||  |||||||   | ||||| | |||||| | |||||||||||||||||||||||    
T  7115220 cgatgtttacgggtgttagtgttccagattgtgatttcagttgcgtgattaggatacgtaaaagcgatttggccattggagatggcgaggaggccgttac 7115121  T
Q  153 aggaaccgataagagccatgg 173  Q
    | |||||||||||| ||||||    
T  7115120 atgaaccgataagatccatgg 7115100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 9292459 - 9292609
Alignment:
Q  22 agggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagt 121  Q
    |||||||| |||||| || |||||||| || ||||| ||| ||||| |||||||| ||| |||||||||||| |||  || ||||||  ||||    | |    
T  9292459 agggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatt 9292558  T
Q  122 tggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatg 172  Q
    ||||  | ||| |||||||||||||||||||| ||||| ||||||| ||||    
T  9292559 tggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatg 9292609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 8573100 - 8572959
Alignment:
Q  26 ataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagttggc 125  Q
    ||||||||||| || |||||||| ||  |||| ||||| ||| ||||||||||||||| ||||| ||||| ||  ||||| ||| | ||||| | |   |    
T  8573100 ataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgagtcaaagcgattaaac 8573001  T
Q  126 cgtgggagatggcgaggaggccgttacaggaaccgataagag 167  Q
    | |  || |||||||||||||||||||| |||||||||||||    
T  8573000 cattagaaatggcgaggaggccgttacatgaaccgataagag 8572959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 435
Target Start/End: Complemental strand, 11986850 - 11986745
Alignment:
Q  330 tgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagag 429  Q
    |||| ||||| ||| |||||| ||| ||||| |||||||||||||| ||||  |||||||| |||||| |||||||||||| |    ||||||||||||     
T  11986850 tgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaa 11986751  T
Q  430 gatttc 435  Q
    ||||||    
T  11986750 gatttc 11986745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 9275056 - 9275204
Alignment:
Q  26 ataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagttggc 125  Q
    ||||||||||| || |||||||| || ||||| ||||  ||| |||||||||||||||| ||||| || |  | || ||||||  |||| ||   |||||    
T  9275056 ataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatttgcatcgtcaggatgcctgaaggcggtttggc 9275155  T
Q  126 cgtgggagatggcgaggaggccgttacaggaaccgataagagccatggt 174  Q
    | | |||||| || | |||||||||||| ||||| ||||||||||||||    
T  9275156 cattggagatagcaatgaggccgttacatgaacctataagagccatggt 9275204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 435
Target Start/End: Complemental strand, 17565434 - 17565334
Alignment:
Q  335 tgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggattt 434  Q
    ||||||||| ||||||  || ||||| ||||   ||||||||||||| || |||||||||| | |||| || |||| ||| |||||||| ||||||||||    
T  17565434 tgaaggttggtgaagttatgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggattt 17565335  T
Q  435 c 435  Q
    |    
T  17565334 c 17565334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 41 - 435
Target Start/End: Original strand, 37463048 - 37463451
Alignment:
Q  41 aaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagttggccgtgggagatggcga 140  Q
    |||||||| ||  |||| ||||| ||| ||||||||||||||||||||||||||| |  |||||||||  ||||||| | |||||| | |||||| ||||    
T  37463048 aaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggagatagcga 37463147  T
Q  141 ggaggccgttacaggaaccgataagagccatggttctggttctattacgtgtgacaggagtgatgttggtggtg---------aaaggatggttgagtgg 231  Q
    ||||||||||||| |||||||||||||||||||| |||  || |   ||||||  ||||  |||||||| | ||         |||||||||||||||||    
T  37463148 ggaggccgttacatgaaccgataagagccatggtgctg--tc-acgccgtgtgtaaggatcgatgttggggctgttacctttgaaaggatggttgagtgg 37463244  T
Q  232 aatcatc--atggatt----tagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaa 325  Q
    ||| |||  || ||||    |||||||||| | ||   ||||||||||||||||||||| |||| | |||| | ||||||||| |||| || |||||| |    
T  37463245 aataatcgaattgattcgattagagaaatcgttat---catcgatttggagttggtagatatcggagttgtttcgaatgattacggattgattgagggga 37463341  T
Q  326 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 425  Q
    ||||||||||||||||||||||||| ||| ||||||||||  |||||||||||||| ||||||||||||||| |||||||||||| ||| ||||| ||||    
T  37463342 tttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacggg 37463441  T
Q  426 agaggatttc 435  Q
    ||||||||||    
T  37463442 agaggatttc 37463451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 39428733 - 39428807
Alignment:
Q  361 gattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 435  Q
    ||||| |||||||| | |||| |||||||||||||||||||| || ||||  |||||||||||||||||||||||    
T  39428733 gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttc 39428807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 308 - 435
Target Start/End: Original strand, 5261 - 5388
Alignment:
Q  308 aaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtg 407  Q
    ||||||| | |||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  5261 aaggatctattgagggaatttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtg 5360  T
Q  408 attttaccggtaagcgggagaggatttc 435  Q
    ||||||||||||||||||||| ||||||    
T  5361 attttaccggtaagcgggagaagatttc 5388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 5012 - 5154
Alignment:
Q  26 ataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagttggc 125  Q
    ||||| ||||| || |||||||| ||  |||| |||||  || ||||||||||||||||||||||||||| |  |||||||||  ||| ||| | || ||    
T  5012 ataggtagagggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctgagagcgatttcgc 5111  T
Q  126 cgtgggagatggcgaggaggccgttacaggaaccgataagagc 168  Q
    ||| ||| | |||||||||||||||||| ||||||||||||||    
T  5112 cgttggaaacggcgaggaggccgttacatgaaccgataagagc 5154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 262 - 435
Target Start/End: Original strand, 26575635 - 26575808
Alignment:
Q  262 atcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcg 361  Q
    ||||| |||||  |||||||||| ||||||||||  | ||| ||||||||||||| || |||||||| |||| |||||||||||||| | ||  ||||||    
T  26575635 atcattgatttcaagttggtagatatcgaatttgaatcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgatgaatttgtaggaatcg 26575734  T
Q  362 attatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 435  Q
    |||| | ||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||    
T  26575735 attaagaatttaagtgattttgaagttgatcggaatcggagaagtgatattaccggtaaacgggagaagatttc 26575808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 26575404 - 26575549
Alignment:
Q  22 agggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagt 121  Q
    |||||| |||||||| || |||||||| || ||||  ||||  |||  |||||||||||||| |||||||||||||  ||| |||||  ||||||||| |    
T  26575404 agggatgggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaaagccatt 26575503  T
Q  122 tggccgtgggagatggcgaggaggccgttacaggaaccgataagag 167  Q
      ||||||||| |||||||||||||||||||| |||||||||||||    
T  26575504 acgccgtgggacatggcgaggaggccgttacatgaaccgataagag 26575549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 561982 - 562066
Alignment:
Q  318 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggag 402  Q
    ||||||| |||||||| ||||||||  |||||| ||| ||||||||||||||||||||  |||| ||| || |||||||| ||||    
T  561982 tgagggagtttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaacttaatcggaatcggag 562066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 304 - 435
Target Start/End: Complemental strand, 41966073 - 41965942
Alignment:
Q  304 gattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggaga 403  Q
    ||||||||||||| ||||||| ||| |||| |||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||||||||| |||||    
T  41966073 gattaaggatcgattgagggattttctgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggaga 41965974  T
Q  404 agtgattttaccggtaagcgggagaggatttc 435  Q
    | |||||||||||||||  |||||| ||||||    
T  41965973 actgattttaccggtaatagggagaagatttc 41965942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 293 - 420
Target Start/End: Complemental strand, 29452713 - 29452586
Alignment:
Q  293 ttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatc 392  Q
    |||||| ||| ||||||||| ||| |||||||||||| ||| ||||| |||||||||| ||| |||||||||| ||||| ||||||||| || ||||| |    
T  29452713 ttgtgtcgaaggattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaac 29452614  T
Q  393 ggaattggagaagtgattttaccggtaa 420  Q
    ||||| |||| || |||| |||||||||    
T  29452613 ggaatcggaggagggattgtaccggtaa 29452586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 420
Target Start/End: Complemental strand, 29467203 - 29467060
Alignment:
Q  277 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 376  Q
    |||||||| |||| | |||||| ||| ||||||| | ||| |||||||||||  ||| ||||| |||||||||| ||| |||||||||| ||||| ||||    
T  29467203 ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttcggaggtgaagtttgatgaagttgtgggaatcgattagggattgaagt 29467104  T
Q  377 gatttagaagttgatcggaattggagaagtgattttaccggtaa 420  Q
    ||||| || ||||| |||||| |||| || |||| |||||||||    
T  29467103 gattttgaggttgaacggaatcggaggagggattgtaccggtaa 29467060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 327 - 435
Target Start/End: Original strand, 36225571 - 36225679
Alignment:
Q  327 ttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggga 426  Q
    ||||||| ||||| ||  |||||| ||||||||||||||  |||||||||||||| ||||||||||||||| |||| || ||||  ||  ||||||||||    
T  36225571 ttttgaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcggga 36225670  T
Q  427 gaggatttc 435  Q
    |||||||||    
T  36225671 gaggatttc 36225679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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