View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11195_high_7 (Length: 464)
Name: NF11195_high_7
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11195_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 12 - 448
Target Start/End: Original strand, 49423713 - 49424148
Alignment:
| Q |
12 |
atgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttatccctaatgtcttgaaagttgaatctatcaaccat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423713 |
atgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttatccctaatgtcttgaaagttgaatctatcaaccat |
49423812 |
T |
|
| Q |
112 |
ctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaatggcttgttaagacagttcaaaagcttgattctc |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423813 |
ctccaactttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaatggcttgttaagacagttcaaaagcttgattctc |
49423912 |
T |
|
| Q |
212 |
atttccattattttttgaatttattagacctataagacgtgagtttctcggttctccacaggcatactaagtattcaaggagcagttgatacaaacctgt |
311 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423913 |
att-ccattattttttgaatttattagacctataagacgtgagtttctcggttctccacaggcatactaagtattcaaggagcagttgatacaaacctgt |
49424011 |
T |
|
| Q |
312 |
cattagtaatctggataatcactccattcatgaaaccaccatggaacggaagtctccgtaagcgccatccaagttgcaccagaaccacgagccttgctag |
411 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49424012 |
cattagtaatctggataatcgctccattcatgaaaccaccatggaacggaagtctccgtaagcgccatccaagttgcaccagaaccacgagccttgctag |
49424111 |
T |
|
| Q |
412 |
attcatcttttgatttgaagtctattcatgatgattc |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49424112 |
attcatcttttgatttgaagtctattcatgatgattc |
49424148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 49425870 - 49426060
Alignment:
| Q |
12 |
atgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttatccctaatgtcttgaaagttgaatctatcaaccat |
111 |
Q |
| |
|
||||||||||||| ||| ||||| ||| || | |||| ||||| || |||| ||| ||||| ||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
49425870 |
atgaagttgtaacatgacattgccaatatgaattggc-gaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccat |
49425968 |
T |
|
| Q |
112 |
ctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaatggcttgttaagacagttcaaaagct |
203 |
Q |
| |
|
||| | || |||||||| | ||||||||| |||||||| ||| ||||||||| ||||||||||| | ||||||||||||||||||| |
|
|
| T |
49425969 |
ctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagct |
49426060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 214
Target Start/End: Complemental strand, 43363293 - 43363148
Alignment:
| Q |
67 |
aaaaatgttatccctaatgtcttgaaagttgaatctatcaaccatctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaa |
166 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| || ||||||| | | |||||||| || |||||||||||||| | ||||||| ||||| |
|
|
| T |
43363293 |
aaaaatgttatcccttatgtcttgaaagttgaatctattaatcatctcctacat--agtttaaactggttgttgaacaattgaagtgaaacactaaacaa |
43363196 |
T |
|
| Q |
167 |
gcttccccaaatggcttgttaagacagttcaaaagcttgattctcatt |
214 |
Q |
| |
|
||||||||||||| || |||||||| ||||||| ||| |||||||| |
|
|
| T |
43363195 |
gcttccccaaatgactcattaagacaattcaaaaacttccttctcatt |
43363148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 293 - 416
Target Start/End: Complemental strand, 49416656 - 49416533
Alignment:
| Q |
293 |
gcagttgatacaaacctgtcattagtaatctggataatcactccattcatgaaaccaccatggaacggaagtctccgtaagcgccatccaagttgcacca |
392 |
Q |
| |
|
||||||||||||||| | ||| | |||||||||||||||||||| ||||||||||||||| | | |||||||||| ||||| | |||||||| ||||||| |
|
|
| T |
49416656 |
gcagttgatacaaacgtatcaatggtaatctggataatcactccgttcatgaaaccaccacgaagcggaagtctctgtaagtgtcatccaagctgcacca |
49416557 |
T |
|
| Q |
393 |
gaaccacgagccttgctagattca |
416 |
Q |
| |
|
| ||| |||||| ||||||||| |
|
|
| T |
49416556 |
aatccatcagccttactagattca |
49416533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 17640992 - 17641030
Alignment:
| Q |
73 |
gttatccctaatgtcttgaaagttgaatctatcaaccat |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17640992 |
gttatccctaaattcttgaaagttgaatctatcaaccat |
17641030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 43363025 - 43362976
Alignment:
| Q |
311 |
tcattagtaatctggata--atcactccattcatgaaaccaccatggaac |
358 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
43363025 |
tcattagtaatctggatataatcacttctttcatgaaaccaccatggaac |
43362976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University