View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11195_low_13 (Length: 342)
Name: NF11195_low_13
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11195_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 14034438 - 14034122
Alignment:
| Q |
18 |
acccaatccttccctcctttcctctcaactttcaccacctccgtttcaaaccgggtcaactcatgaatcccaaactcatctgcaaattcctccaaaaaac |
117 |
Q |
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| T |
14034438 |
acccaatccttccctcctttcctctcaactttcaccacctccgtttcaaaccgggtcaactcatgaatcccaaactcatctgcaaattcctccaaaaaac |
14034339 |
T |
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| Q |
118 |
gaagcacttcttgatgacccggaaacgttcttggatcaccagattctcgcttggacaaagggtaatctaagaaccccatgatatgcctaggaagattggt |
217 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
14034338 |
gaagcacttcttcatgacccggaaacgttctcggatcaccagattctcgcttggacaaagggtaatctaagaaccccatgatatgtcttggaagattggt |
14034239 |
T |
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| Q |
218 |
gcgtagtgagaggtacacactgctgtgaactgtttctcgggttggatcaatgctaagaggatcggagtctgatttagaggtgtatatccaggttcctccg |
317 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14034238 |
gcgtagtgagaggtacacgctgctgtgaactgtttctcgggttggatcaatgctaagaggatcggagtctgatttagaggtgtatatccaggttcctccg |
14034139 |
T |
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| Q |
318 |
acgcggttgttcttctc |
334 |
Q |
| |
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|| |||||||||||||| |
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| T |
14034138 |
acacggttgttcttctc |
14034122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 34 - 334
Target Start/End: Original strand, 14045842 - 14046142
Alignment:
| Q |
34 |
ctttcctctcaactttcaccacctccgtttcaaaccgggtcaactcatgaatcccaaactcatctgcaaattcctccaaaaaacgaagcacttcttgatg |
133 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
14045842 |
ctttcctctcaactttcaccacctccgtttcaaatcgggtcaactcatgaatcccaaattcacctgcaaattcctccaaaaaacgaagcacttcttcatg |
14045941 |
T |
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| Q |
134 |
acccggaaacgttcttggatcaccagattctcgcttggacaaagggtaatctaagaaccccatgatatgcctaggaagattggtgcgtagtgagaggtac |
233 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || || |||||||||||||| || ||| |||| |
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| T |
14045942 |
acccggaaacgttcttggatcaccggattctctcttggacaaagggtaatctaagaaccccatgatttgtcttggaagattggtgcgcagagagtggtat |
14046041 |
T |
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| Q |
234 |
acactgctgtgaactgtttctcgggttggatcaatgctaagaggatcggagtctgatttagaggtgtatatccaggttcctccgacgcggttgttcttct |
333 |
Q |
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|| ||||||||||||||||||| || || || ||||| |||||||||||||||| ||| | ||||||||||||||||||||| || ||||||||||||| |
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| T |
14046042 |
acgctgctgtgaactgtttctctggccgggtccatgcttagaggatcggagtctgtttttggggtgtatatccaggttcctcccacacggttgttcttct |
14046141 |
T |
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| Q |
334 |
c |
334 |
Q |
| |
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| |
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| T |
14046142 |
c |
14046142 |
T |
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