View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11195_low_14 (Length: 336)
Name: NF11195_low_14
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11195_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 48529502 - 48529174
Alignment:
| Q |
1 |
ttgttattgccgtcaccttctctggttctgtttcaacagtttctctttttggatttaatgttttggaagagttgaggttttgattatcaatttttcttgt |
100 |
Q |
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||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48529502 |
ttgttattgtcgtcgccttctctggttctgtttcaacagtctctctttttggatttaatgttttggaagagttgaggttttgattatgaatttttcttgt |
48529403 |
T |
|
| Q |
101 |
actaaaatctcaaggtgtcaatggctcattttttagaattgtaaaaaggattcggaggggttttgattatgaattttgggaaaattaatagcttcttgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48529402 |
actaaaatctcaaggtgtcaatggctcattttttagaattgtaaaaaggattaggaggggttttgattatgaattttgggaaaattaatagcttcttgag |
48529303 |
T |
|
| Q |
201 |
tttgttccaggaagaacaa-----gctatgccgttacaaatcagagacggaattcgcaccaccgttacaagctccattcaagaggttttcccatgcctcc |
295 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48529302 |
tttgttccaggaagaacaagctaagctatgccgttacaaatcagagacggaatttgcaccgccgttacaagctccattcaagaggttttcccatgcctcc |
48529203 |
T |
|
| Q |
296 |
atccagatccgtctaggtttccctcttca |
324 |
Q |
| |
|
||||||||||||| |||||||||||||| |
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| T |
48529202 |
atccagatccgtcagggtttccctcttca |
48529174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 34849498 - 34849784
Alignment:
| Q |
1 |
ttgttattgccgtcaccttctctggttctgtttcaacagtttctctttttggatttaatgttttggaagagttgaggttttgattatcaatttttcttgt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
34849498 |
ttgttattgttgtcaccttctctggttctgtttcaacagtttctctttttggatttaatgttttggaagagttgaggttttgattatgaatttttctggt |
34849597 |
T |
|
| Q |
101 |
actaaaatctcaaggtgtcaatggctcattttttagaattgtaaaaaggattcggaggggttttgattatgaattttgggaaaattaatagcttcttgag |
200 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34849598 |
actaaaatctcaaggtgtcaatggctcatttgttagaattgtaaaaaggatacggaggggttttgattatgaattttgggaaaattaatagcttcttgag |
34849697 |
T |
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| Q |
201 |
tttgttccaggaagaacaagctatgccgttacaaatcagagacggaattcgcaccaccgttacaagctccattcaagaggttttccc |
287 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||| |
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| T |
34849698 |
tttgttccaggaagaacaagctccgccgttacaaatcagagacgtaattcgcaccgccgttacaagctccgttcaagaggttttccc |
34849784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 54075206 - 54075276
Alignment:
| Q |
239 |
gagacggaattcgcaccaccgttacaagctccattcaagaggttttcccatgcctccatccagatccgtct |
309 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||||||||||||| |||| | ||||||||||||||| |
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| T |
54075206 |
gagacggaattcgcaccgccgttacaagctctgttcaagaggttttccgatgcttgcatccagatccgtct |
54075276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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