View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11195_low_16 (Length: 305)
Name: NF11195_low_16
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11195_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 33348189 - 33347908
Alignment:
| Q |
1 |
tgtaactctgtcggtgattcacctaggcgaggaaaatatgctaaaattattatgaatatttttctacaatatttttgataaaagtacatgatagttaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33348189 |
tgtaactctgtcggtgattcacctaggcgaggaaaatatgctaaaattattatgaatatttttctacaatatttttgataaaaatacatgatagttaaaa |
33348090 |
T |
|
| Q |
101 |
ttttcaatgaacaaatataaaaacatgattactaccaacacactttcttctataatttaaaatttcaagtatctctcacgattttgaaagggttcctacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33348089 |
ttttcaatgaacaaatataaaaacatgattactcccaacacactttcttctataatttaaaatttcaagtatctctcacgattttgaaagggttcctacc |
33347990 |
T |
|
| Q |
201 |
aaattacatagattttacatgaatgaagtgaaactcatttagagtgtgtattacttgaatttttcatatgaaacacatgaac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33347989 |
aaattacatagattttacatgaatgaagtgaaactcatttagagtgtgtattacttgaatttttcatatgaaacacatgaac |
33347908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University