View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11195_low_18 (Length: 277)
Name: NF11195_low_18
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11195_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 33347887 - 33347650
Alignment:
| Q |
22 |
ttaagagttagaaattcacttttaaggtgaataaataatttgttcatgattcaaattctggtctctgcatatattatagaatgtctatatcaattgagat |
121 |
Q |
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| T |
33347887 |
ttaagagttagaaattcacttttaaggtgaataaataatttgttcatggttcaaattctggtctctgcatatattatagaatgtctatatcaattgagat |
33347788 |
T |
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| Q |
122 |
aaactcataaaaacactcaaatttattaatcaactgat-nnnnnnnnctacatggaccaaataaatgttaataacaattcacaattacgaattccagatt |
220 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33347787 |
aaactcataaaaacactcaaacttattaatcaactgataaaaaaaaactatatggaccaaataaatgttaataacaattcacaattacgaattccagatt |
33347688 |
T |
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| Q |
221 |
aacaaagaaaagtatattcgaatatgctatgtctaggt |
258 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
33347687 |
aacaaagaaaagtatatttgaatatgctatgtctaggt |
33347650 |
T |
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