View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11195_low_19 (Length: 266)
Name: NF11195_low_19
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11195_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 44860462 - 44860716
Alignment:
| Q |
1 |
atacatctacacattggactttaatatagattctcctcacatttctatttgttttcatattacttagctcttagcagtaggcaacctgttaggataccgg |
100 |
Q |
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| T |
44860462 |
atacatctacacattggactttaatatagattctcctcacatttctatttgttttcatattacttagctcttagcagtaggcaacctgttaggataccgg |
44860561 |
T |
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| Q |
101 |
tttgggcctaagctcaatatatgggttgaatagaaaagatgaagaattgtcgatgacaattagtgggcatatgcaatgtgattataaaggcgggaagtaa |
200 |
Q |
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| T |
44860562 |
tttgggcctaagctcaatatatgggttgaatagaaaagatgaagaattgtcgatgacaattagtgggcatatgcaatgtgattataaaggcgggaagtaa |
44860661 |
T |
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| Q |
201 |
gatagtgaacattcattaaaaaatattgttagagttggttaggagagttctctct |
255 |
Q |
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| T |
44860662 |
gatagtgaacattcattgaaaaatattgttagagttggttaggagagttttctct |
44860716 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 42225174 - 42225263
Alignment:
| Q |
157 |
caattagtgggcatatgcaatgtgattataaaggcgggaagtaagatagtgaacattcattaaaaaatattgttagagttggttaggaga |
246 |
Q |
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| T |
42225174 |
caattagttggaatatgcaacatgattataaggggtggaagtaagagagggaacattcattcagaaatattgctagagtttgttaggaga |
42225263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 30259551 - 30259518
Alignment:
| Q |
222 |
aatattgttagagttggttaggagagttctctct |
255 |
Q |
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| T |
30259551 |
aatattgttagagttggttaggagagttttctct |
30259518 |
T |
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