View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11195_low_2 (Length: 667)

Name: NF11195_low_2
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11195_low_2
NF11195_low_2
[»] chr8 (19 HSPs)
chr8 (19-454)||(9800519-9800954)
chr8 (528-648)||(9800323-9800445)
chr8 (546-655)||(9800047-9800156)
chr8 (546-655)||(17915480-17915588)
chr8 (546-649)||(10047487-10047589)
chr8 (546-645)||(26243378-26243477)
chr8 (549-650)||(10047856-10047957)
chr8 (578-655)||(12489268-12489345)
chr8 (546-647)||(13315210-13315311)
chr8 (546-655)||(26997842-26997951)
chr8 (546-649)||(6297470-6297573)
chr8 (550-649)||(16662180-16662279)
chr8 (546-649)||(17914205-17914308)
chr8 (546-646)||(7344838-7344938)
chr8 (546-626)||(16662473-16662553)
chr8 (547-649)||(6298014-6298116)
chr8 (549-655)||(26720332-26720438)
chr8 (542-587)||(39234996-39235041)
chr8 (546-638)||(12489517-12489608)
[»] chr4 (17 HSPs)
chr4 (549-652)||(52398691-52398794)
chr4 (546-649)||(7118143-7118246)
chr4 (549-655)||(26168004-26168109)
chr4 (546-652)||(29691533-29691639)
chr4 (549-649)||(41510079-41510179)
chr4 (546-649)||(3296551-3296654)
chr4 (546-655)||(51906792-51906901)
chr4 (549-649)||(3296923-3297023)
chr4 (546-649)||(29691891-29691994)
chr4 (546-649)||(30608612-30608715)
chr4 (563-650)||(34129019-34129106)
chr4 (546-649)||(34129279-34129382)
chr4 (548-649)||(48553906-48554007)
chr4 (563-655)||(30608270-30608362)
chr4 (549-641)||(38759715-38759807)
chr4 (549-655)||(1791521-1791627)
chr4 (541-611)||(26984147-26984217)
[»] chr2 (16 HSPs)
chr2 (546-653)||(21182315-21182422)
chr2 (549-649)||(32114450-32114550)
chr2 (546-649)||(2191225-2191328)
chr2 (548-650)||(39729584-39729686)
chr2 (549-654)||(3691094-3691199)
chr2 (546-649)||(3691368-3691471)
chr2 (553-655)||(10706624-10706724)
chr2 (546-649)||(32114174-32114276)
chr2 (549-650)||(2517424-2517525)
chr2 (546-654)||(21217295-21217403)
chr2 (546-654)||(21264999-21265107)
chr2 (557-649)||(24093535-24093627)
chr2 (546-649)||(24093164-24093267)
chr2 (546-647)||(32860822-32860923)
chr2 (549-649)||(21216934-21217034)
chr2 (549-649)||(21265368-21265468)
[»] chr6 (10 HSPs)
chr6 (546-655)||(14712979-14713088)
chr6 (551-655)||(21113042-21113146)
chr6 (546-655)||(7645955-7646064)
chr6 (546-611)||(8710357-8710422)
chr6 (546-611)||(5974019-5974084)
chr6 (546-655)||(17157554-17157663)
chr6 (546-605)||(211449-211508)
chr6 (546-647)||(4510196-4510298)
chr6 (546-611)||(211738-211803)
chr6 (546-607)||(17157854-17157915)
[»] chr5 (15 HSPs)
chr5 (546-649)||(16284282-16284385)
chr5 (550-650)||(8648043-8648143)
chr5 (546-646)||(18999622-18999722)
chr5 (546-649)||(3406839-3406941)
chr5 (546-644)||(1650013-1650110)
chr5 (546-655)||(31588319-31588429)
chr5 (546-650)||(87239-87343)
chr5 (546-649)||(18999374-18999477)
chr5 (546-655)||(13987290-13987400)
chr5 (546-614)||(22231174-22231242)
chr5 (546-649)||(8750339-8750442)
chr5 (546-649)||(31176515-31176618)
chr5 (548-646)||(3406469-3406567)
chr5 (549-655)||(3935667-3935773)
chr5 (555-649)||(18339090-18339184)
[»] chr7 (15 HSPs)
chr7 (546-652)||(22948854-22948960)
chr7 (546-649)||(20544290-20544392)
chr7 (550-650)||(11974676-11974776)
chr7 (593-653)||(44803381-44803441)
chr7 (546-649)||(44803611-44803714)
chr7 (546-655)||(20543919-20544028)
chr7 (549-649)||(23548986-23549086)
chr7 (546-650)||(32092236-32092340)
chr7 (546-611)||(30939581-30939646)
chr7 (546-646)||(28854685-28854785)
chr7 (546-649)||(17075227-17075330)
chr7 (546-611)||(16755650-16755714)
chr7 (546-647)||(18152764-18152865)
chr7 (549-649)||(17075596-17075696)
chr7 (541-649)||(42750097-42750205)
[»] chr1 (18 HSPs)
chr1 (546-655)||(9880763-9880872)
chr1 (550-655)||(31436356-31436461)
chr1 (546-655)||(50359412-50359521)
chr1 (578-650)||(19895778-19895850)
chr1 (546-649)||(18180257-18180360)
chr1 (546-655)||(5683534-5683643)
chr1 (546-656)||(48154982-48155091)
chr1 (546-649)||(5172753-5172856)
chr1 (546-649)||(9880492-9880595)
chr1 (546-655)||(6751326-6751436)
chr1 (546-652)||(18179887-18179993)
chr1 (549-655)||(3591310-3591416)
chr1 (546-588)||(4288475-4288517)
chr1 (549-611)||(50359136-50359198)
chr1 (546-611)||(1500998-1501063)
chr1 (546-611)||(37927528-37927593)
chr1 (546-649)||(48155258-48155361)
chr1 (546-650)||(19895408-19895512)
[»] chr3 (14 HSPs)
chr3 (549-649)||(43933451-43933551)
chr3 (546-649)||(13637759-13637862)
chr3 (546-655)||(22814304-22814413)
chr3 (547-646)||(44504368-44504467)
chr3 (546-653)||(51471343-51471450)
chr3 (546-648)||(43933708-43933809)
chr3 (544-649)||(44504098-44504203)
chr3 (546-650)||(25770694-25770798)
chr3 (546-653)||(9218489-9218595)
chr3 (546-655)||(50732233-50732342)
chr3 (546-655)||(50780513-50780622)
chr3 (594-650)||(13637531-13637587)
chr3 (549-649)||(37172092-37172192)
chr3 (546-610)||(45728335-45728399)
[»] scaffold0063 (2 HSPs)
scaffold0063 (546-655)||(34800-34909)
scaffold0063 (546-648)||(35172-35274)
[»] scaffold0009 (1 HSPs)
scaffold0009 (546-655)||(108095-108204)


Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 9800954 - 9800519
Alignment:
Q  19 agaagacaccaaaacagtggg-ctattattatttgcaagtggatggatattttaattttagattgataaggacaagctaaccttcaagtttaagaaatga 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9800954 agaagacaccaaaacagtggggctattattatttgcaagtggatggatattttaattttagattgataaggacaaactaaccttcaagtttaagaaatga 9800855  T
Q  118 tttgattacattatttatggtgctcgtgctgaatagtggaaccaacaataactcacatgtgactcatagttatgaacctttgatgttttgtgtgcgcatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9800854 tttgattacattatttatggtgctcgtgctgaatagtggaaccaacaataactcacatgtgactcatagttatgaacctttgatgttttgtgtgcgcatg 9800755  T
Q  218 ttaaagatgaagtcggttgcttgtctcttaccaaaaacattaacaaagcattgagtttaccacgtaataataaatggtacggaagaaagaaatatttgca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9800754 ttaaagatgaagtcggttgcttgtctcttaccaaaaacattaacaaagcattgagtttaccacgtaataataaatggtacggaagaaagatatatttgca 9800655  T
Q  318 actctcacactcattcttttcctatgatgacaagttgctatgttcataaaagaaggaaaattgtccaaaacaaaatactactacaaatgtctttctagag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  9800654 actctcacactcattcttttcctatgatgacaagttgctatgttcataaaaaaaggaaaattgtccaaaacaaaatgctactacaaatgtctttctagag 9800555  T
Q  418 gatcgagtaggtacttattagatgaaataccgttgtc 454  Q
    |||||| ||||||| || ||||||||||||| |||||    
T  9800554 gatcgaataggtacata-tagatgaaatacctttgtc 9800519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 528 - 648
Target Start/End: Complemental strand, 9800445 - 9800323
Alignment:
Q  528 ttaactccatctagttaaatgt--ttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatatt 625  Q
    |||||||| ||||||||||| |  |||| ||||||  ||||||||||| || |||||||||||  || |||| ||||||| ||||| || | |||| |||    
T  9800445 ttaactccctctagttaaatatatttttggtccttgcattttgcgcccctttgaagaatagtccatatatttcattaaatgtttttaaaatccttacatt 9800346  T
Q  626 ttatctttgttatcaaaattagt 648  Q
    ||||||| |||||||||||||||    
T  9800345 ttatcttcgttatcaaaattagt 9800323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 546 - 655
Target Start/End: Original strand, 9800047 - 9800156
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||||||  || |||||||| || ||| |||||||||||| ||||| || | || | |||| ||||  ||||||||||||    
T  9800047 atgtttttagtccttagattttgcgcctctttgaagaataatccttacattttattaaatgtttttaaaatcctcacatttcatctccgttatcaaaatt 9800146  T
Q  646 agtctctgct 655  Q
    ||||| ||||    
T  9800147 agtctttgct 9800156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 17915588 - 17915480
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| |||||| || | || |||||||| || ||| |||||||||||| ||||| || | || | ||||||||| |||||||||||||    
T  17915588 atgtttttagtccttacattttgtgctcctttgaagaata-tccttacattttattaaatgttttttaaatcctcacattttatctctgttatcaaaatt 17915490  T
Q  646 agtctctgct 655  Q
    ||||| ||||    
T  17915489 agtctttgct 17915480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 10047487 - 10047589
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||| |||||| |||||||||||||| |||||||||||  || | || ||||||| ||||| || |||| | |||||||||  ||||||||||||    
T  10047487 atgtttttaatccttacattttgcgcccttttgaagaatagtccctaca-ttcattaaatgtttttaaaattctcacattttatctccgttatcaaaatt 10047585  T
Q  646 agtc 649  Q
    ||||    
T  10047586 agtc 10047589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 645
Target Start/End: Complemental strand, 26243477 - 26243378
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||||||||||||| | || |||||||||||| || |||| ||||||| ||||| || | || | |||||||||   |||||||||||    
T  26243477 atgtttttagtccttatattttgcgctcctttgaagaatagtctctatatttcattaaatgtttttaaaatcctcacattttatctccattatcaaaatt 26243378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 549 - 650
Target Start/End: Complemental strand, 10047957 - 10047856
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    |||||| |||||| ||||| | | | || ||||||||||||||| || | ||||||||||||| || || | |||||||||||  |||||||||||||||    
T  10047957 tttttaatccttacattttccactcctttgaagaatagtctttatatatcattaaatatttttaaaattttcatattttatctccgttatcaaaattagt 10047858  T
Q  649 ct 650  Q
    ||    
T  10047857 ct 10047856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 578 - 655
Target Start/End: Original strand, 12489268 - 12489345
Alignment:
Q  578 gaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtctctgct 655  Q
    |||||||||||  || |||| ||||||||||||| || | ||   |||||||||||||||||||||||||||||||||    
T  12489268 gaagaatagtccctacatttcattaaatatttttaaaatcctcgcattttatctttgttatcaaaattagtctctgct 12489345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 546 - 647
Target Start/End: Original strand, 13315210 - 13315311
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||||||| ||  ||||||||||  || |||| ||||||| ||||| || |  | | ||||||||| |||||||||||||    
T  13315210 atgtttttagtccttacattttgcgcccatttaaagaatagtccctacatttcattaaatgtttttaaaatcatcacattttatctctgttatcaaaatt 13315309  T
Q  646 ag 647  Q
    ||    
T  13315310 ag 13315311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 26997951 - 26997842
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||||| |||| |||||||| || || |||||||||||  || |||| ||||| ||||||| || | || | |||||||||  ||||||||||||    
T  26997951 atgtttttagttcttacattttgcgtccatttgaagaatagtccatacatttcattaattatttttaaaatcctcacattttatctccgttatcaaaatt 26997852  T
Q  646 agtctctgct 655  Q
    |||| |||||    
T  26997851 agtccctgct 26997842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 6297470 - 6297573
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||| ||||||||||| ||||||||||| || ||||||||||   || |||| ||||||| ||||| || | || | ||||| ||| |||||||||||||    
T  6297470 atgtctttagtccttacattttgcgcccctttgaagaatagttcctacatttcattaaatgtttttaaaatcctcacattttctctctgttatcaaaatt 6297569  T
Q  646 agtc 649  Q
    ||||    
T  6297570 agtc 6297573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 550 - 649
Target Start/End: Original strand, 16662180 - 16662279
Alignment:
Q  550 ttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtc 649  Q
    ||||||| |||| ||||||||| | || |||||||||||  || |||| ||||||| ||||| || |||| | ||||||||| |||||| ||||||||||    
T  16662180 ttttagttcttacattttgcgctcctttgaagaatagtccctacatttcattaaatgtttttaaaattctcacattttatctctgttattaaaattagtc 16662279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 17914205 - 17914308
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||| |||| ||| |||||||| |  || |||||||||||  || |||||||||||| ||||| || | || | ||||||||| |||||||||||||    
T  17914205 atgttttaagtctttacattttgcgtctctttgaagaatagtccctacattttattaaatgtttttaaaatcctcacattttatctctgttatcaaaatt 17914304  T
Q  646 agtc 649  Q
    ||||    
T  17914305 agtc 17914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 646
Target Start/End: Complemental strand, 7344938 - 7344838
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| |||||| |||| || |||||||| ||  || ||||||||| || ||||| || | || ||||||||| |  ||||||||||||    
T  7344938 atgtttttagtccttacattttgtgcccctttgaagaataatccatacattttattatatgtttttaaaatcctcatattttatgtccgttatcaaaatt 7344839  T
Q  646 a 646  Q
    |    
T  7344838 a 7344838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 626
Target Start/End: Complemental strand, 16662553 - 16662473
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattt 626  Q
    |||||||||||||||| ||||||||| |||| ||||||||||   || |||| ||||||| ||||| || |||| ||||||    
T  16662553 atgtttttagtccttacattttgcgctcttttgaagaatagttcctacatttcattaaatgtttttaaaattctcatattt 16662473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 649
Target Start/End: Complemental strand, 6298116 - 6298014
Alignment:
Q  547 tgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatta 646  Q
    |||||||||| |||| |||||||  || || ||||||||||| ||| |||| ||||||| ||||| || | || | ||||||| |  |||||||||||||    
T  6298116 tgtttttagtgcttacattttgcttccctttgaagaatagtccttacatttcattaaatgtttttaaaatcctcacattttatttccgttatcaaaatta 6298017  T
Q  647 gtc 649  Q
    |||    
T  6298016 gtc 6298014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 655
Target Start/End: Original strand, 26720332 - 26720438
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    |||||||||| || ||||||||| | || |||||||||||  || |||| ||||||||||||| || | | || ||||| ||| ||||| || ||||| |    
T  26720332 tttttagtccctacattttgcgctcctttgaagaatagtccctacatttcattaaatatttttaaaatccctacattttttctctgttaacacaattaat 26720431  T
Q  649 ctctgct 655  Q
    |||||||    
T  26720432 ctctgct 26720438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 587
Target Start/End: Complemental strand, 39235041 - 39234996
Alignment:
Q  542 ttaaatgtttttagtccttatattttgcgccctttcgaagaatagt 587  Q
    |||||||||||||||||||||||||| ||| | || ||||||||||    
T  39235041 ttaaatgtttttagtccttatattttacgctcctttgaagaatagt 39234996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 638
Target Start/End: Complemental strand, 12489608 - 12489517
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttat 638  Q
    |||||||||||||||| |||||||| | ||  ||||||||||| ||| |||| ||| ||| ||||| || | |||| ||||||||| ||||||    
T  12489608 atgtttttagtccttacattttgcgtcgttatgaagaatagtccttacatttcatt-aatgtttttaaaatccttacattttatctctgttat 12489517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 549 - 652
Target Start/End: Original strand, 52398691 - 52398794
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    |||||| |||||| ||||||||||  || |||||||||||| |  |||||||||||||||||| || |||||||||||||| || |||||||||||||||    
T  52398691 tttttattccttacattttgcgccactttgaagaatagtctctgcattttattaaatatttttaaaattcttatattttattttcgttatcaaaattagt 52398790  T
Q  649 ctct 652  Q
    ||||    
T  52398791 ctct 52398794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 649
Target Start/End: Complemental strand, 7118246 - 7118143
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||||||| || |||||||||||  || |||| ||||||| ||||| || |||| | |||||||||   |||||||||||    
T  7118246 atgtttttagtccttacattttgcgcccctttgaagaatagtccatacatttcattaaatgtttttaaaattctcaaattttatctccattatcaaaatt 7118147  T
Q  646 agtc 649  Q
    ||||    
T  7118146 agtc 7118143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 549 - 655
Target Start/End: Original strand, 26168004 - 26168109
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    ||||||||| ||| ||||||||||||||  ||||||||| | || |||| ||||||||||||| || | || | |||||||||  |||||||||||||||    
T  26168004 tttttagtcattacattttgcgcccttttaaagaatagtttctacattt-attaaatatttttaaaatcctcacattttatctccgttatcaaaattagt 26168102  T
Q  649 ctctgct 655  Q
    |||||||    
T  26168103 ctctgct 26168109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 546 - 652
Target Start/End: Original strand, 29691533 - 29691639
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||||||||||||||||||  || || |||||||||||  || |||| ||||||| ||||| || | || | |||||||||  ||||||||||||    
T  29691533 atgtttttagtccttatattttgcatccatttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatt 29691632  T
Q  646 agtctct 652  Q
    |||||||    
T  29691633 agtctct 29691639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 549 - 649
Target Start/End: Original strand, 41510079 - 41510179
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    |||||| |||||| ||||||||||| || |||||||||||  || |||||||||||||||| | || | || |||||||||||   ||||||||||||||    
T  41510079 tttttaatccttacattttgcgcccctttgaagaatagtccctacattttattaaatatttctaaaatcctcatattttatctcccttatcaaaattagt 41510178  T
Q  649 c 649  Q
    |    
T  41510179 c 41510179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 3296551 - 3296654
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||||||| || |||||||| ||  || |||| ||||||| ||||| || | || | |||||||||  ||||||||||||    
T  3296551 atgtttttagtccttacattttgcgcccctttgaagaatattccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatt 3296650  T
Q  646 agtc 649  Q
    ||||    
T  3296651 agtc 3296654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 51906901 - 51906792
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||||| | || |||||||||||  || || | ||||||| ||||| || | || | |||||||||  ||||||||||||    
T  51906901 atgtttttagtccttacattttgcgctcctttgaagaatagtccctacatctcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatt 51906802  T
Q  646 agtctctgct 655  Q
    ||| ||||||    
T  51906801 agtttctgct 51906792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 649
Target Start/End: Complemental strand, 3297023 - 3296923
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    ||||||||||||| |||||||| || || |||||||||||  ||  ||| ||||||| ||||| || | |||| |||||||||  |||||||||||||||    
T  3297023 tttttagtccttacattttgcgaccctttgaagaatagtccctacgtttcattaaatgtttttaaaatccttacattttatctccgttatcaaaattagt 3296924  T
Q  649 c 649  Q
    |    
T  3296923 c 3296923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 649
Target Start/End: Complemental strand, 29691994 - 29691891
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||| ||  ||||| ||| | || ||| |||||| |||| |||| ||||||||||||| || | || | ||||||||| |||||||||||||    
T  29691994 atgtttttagtctttgcattttacgctcctttgaataatagtttttatatttcattaaatatttttaaaatcctcacattttatctctgttatcaaaatt 29691895  T
Q  646 agtc 649  Q
    ||||    
T  29691894 agtc 29691891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 649
Target Start/End: Complemental strand, 30608715 - 30608612
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||| ||||| |||||| |||  || |||||||||||| || |||| ||||||| ||||| || | || | |||||||||  ||||||||||||    
T  30608715 atgtttttagaccttacattttgtgcctctttgaagaatagtctctatatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatt 30608616  T
Q  646 agtc 649  Q
    ||||    
T  30608615 agtc 30608612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 563 - 650
Target Start/End: Original strand, 34129019 - 34129106
Alignment:
Q  563 attttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtct 650  Q
    |||||||| || || |||||||||||  || |||||||||||  ||||| || |||| |||||||||||| ||||||||| |||||||    
T  34129019 attttgcgtccctttgaagaatagtccctatattttattaaacgtttttaaaattctcatattttatcttcgttatcaaagttagtct 34129106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 649
Target Start/End: Complemental strand, 34129382 - 34129279
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||| || ||||| ||||||| ||  || |||||||||||  || |||| ||||||||||||| || | || | ||||||||| |||||||||||||    
T  34129382 atgttttcagcccttacattttgcaccaatttgaagaatagtccctacatttcattaaatatttttaaaatcctcacattttatctctgttatcaaaatt 34129283  T
Q  646 agtc 649  Q
    ||||    
T  34129282 agtc 34129279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 649
Target Start/End: Original strand, 48553906 - 48554007
Alignment:
Q  548 gtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattag 647  Q
    |||||||||||||| |||||||| || || |||||||||||  || |||| ||||||  ||||| || | || | |||||||||  ||||||||||||||    
T  48553906 gtttttagtccttacattttgcgtccctttgaagaatagtccatacatttcattaaacctttttaaaatcctcacattttatctccgttatcaaaattag 48554005  T
Q  648 tc 649  Q
    ||    
T  48554006 tc 48554007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 655
Target Start/End: Original strand, 30608270 - 30608362
Alignment:
Q  563 attttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtctctgct 655  Q
    |||||||| | ||| |||||||||||  || |||| |||| |||||||| || | || | |||||||||  ||||||||||||||||||||||    
T  30608270 attttgcgtcattttgaagaatagtccctacatttcattatatatttttaaaatcctcacattttatctccgttatcaaaattagtctctgct 30608362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 641
Target Start/End: Original strand, 38759715 - 38759807
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaa 641  Q
    ||||||||||||| ||||||||||  || |||||||||||| || |||| ||||||| ||||| || | || | |||||||||  ||||||||    
T  38759715 tttttagtccttaaattttgcgcctctttgaagaatagtctatacatttcattaaatgtttttaaaatcctcaaattttatctccgttatcaa 38759807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 655
Target Start/End: Complemental strand, 1791627 - 1791521
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    |||||| ||||| |||||||| ||| || ||| ||||||  | | |||||||||||| ||||| || |  ||| |||||||||  ||||| |||||||||    
T  1791627 tttttaatccttgtattttgctcccctttgaaaaatagttctcacattttattaaatgtttttaaaatctttacattttatctccgttattaaaattagt 1791528  T
Q  649 ctctgct 655  Q
    |||||||    
T  1791527 ctctgct 1791521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 611
Target Start/End: Original strand, 26984147 - 26984217
Alignment:
Q  541 gttaaatgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatattttt 611  Q
    ||||||||||||||||  ||||||||||||||  || |||||||||||  || | |||||||||| |||||    
T  26984147 gttaaatgtttttagtttttatattttgcgcctctttgaagaatagtccctagactttattaaatgttttt 26984217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 546 - 653
Target Start/End: Original strand, 21182315 - 21182422
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||||||| || ||||||||||| ||| |||| ||||||| ||||| || || | | ||||||||| |||||||||||||    
T  21182315 atgtttttagtccttacattttgcgcccctttgaagaatagtccttacatttcattaaatgtttttaaaattttcacattttatctctgttatcaaaatt 21182414  T
Q  646 agtctctg 653  Q
    ||||||||    
T  21182415 agtctctg 21182422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 549 - 649
Target Start/End: Complemental strand, 32114550 - 32114450
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    ||||||||||||| ||||||||||  ||| |||||||||| ||| |||| ||||||||||||| || |||| | | ||||||| ||||||||||||||||    
T  32114550 tttttagtccttacattttgcgcctcttcaaagaatagtccttacatttcattaaatatttttaaaattctcacactttatctctgttatcaaaattagt 32114451  T
Q  649 c 649  Q
    |    
T  32114450 c 32114450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 2191225 - 2191328
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||||||| || ||||||||||| ||| |||| ||||||| ||||| || | || | |||||||||  ||||||||||||    
T  2191225 atgtttttagtccttacattttgcgcccctttgaagaatagtccttacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatt 2191324  T
Q  646 agtc 649  Q
    ||||    
T  2191325 agtc 2191328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 548 - 650
Target Start/End: Complemental strand, 39729686 - 39729584
Alignment:
Q  548 gtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattag 647  Q
    ||||||||||||||||||||||| |  || ||||||||||||||| |||| ||||||||||||| || | || | |||||||||  |||||| |||||||    
T  39729686 gtttttagtccttatattttgcgtcagtttgaagaatagtctttatatttcattaaatatttttaaaatcctcacattttatctccgttatcgaaattag 39729587  T
Q  648 tct 650  Q
    |||    
T  39729586 tct 39729584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 549 - 654
Target Start/End: Original strand, 3691094 - 3691199
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    |||||||||||||||||||||||||||| ||||||||||   || |||| ||||||| ||||| || | || | ||||||||   |||||||||||||||    
T  3691094 tttttagtccttatattttgcgcccttttgaagaatagttcctacatttcattaaatgtttttaaaatcctcacattttatcaccgttatcaaaattagt 3691193  T
Q  649 ctctgc 654  Q
    | ||||    
T  3691194 ccctgc 3691199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 649
Target Start/End: Complemental strand, 3691471 - 3691368
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||||||||| |||||||||||| || |||||||||||  || |||| ||||||| ||||| || |  | | |||||||||  ||||||||||||    
T  3691471 atgtttttagtccttgtattttgcgcccctttgaagaatagtccctacatttcattaaatgtttttaaaatcttcacattttatctccgttatcaaaatt 3691372  T
Q  646 agtc 649  Q
    ||||    
T  3691371 agtc 3691368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 553 - 655
Target Start/End: Complemental strand, 10706724 - 10706624
Alignment:
Q  553 tagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtctct 652  Q
    ||||||||| ||||||||||| || |||||||||||  || |||| ||||||||||||| || | || | |||||||||  |||||||||| ||||| ||    
T  10706724 tagtccttacattttgcgcccctttgaagaatagtc--tatatttcattaaatatttttaaaatcctcacattttatctccgttatcaaaactagtccct 10706627  T
Q  653 gct 655  Q
    |||    
T  10706626 gct 10706624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 32114174 - 32114276
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||| |||||||| |||||||||||  || | | |||||||| ||||| || | || | ||||||||| || ||||||||||    
T  32114174 atgtttttagtccttacattttacgcccttt-gaagaatagtccctacaatctattaaatgtttttaaaatcctcacattttatctctgatatcaaaatt 32114272  T
Q  646 agtc 649  Q
    ||||    
T  32114273 agtc 32114276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 650
Target Start/End: Original strand, 2517424 - 2517525
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    ||||||||||||| |||||||| |  || |||||||||||  || |||| ||||||| ||||| || | || | |||||||||  |||||||||||||||    
T  2517424 tttttagtccttacattttgcgtctctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagt 2517523  T
Q  649 ct 650  Q
    ||    
T  2517524 ct 2517525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 654
Target Start/End: Complemental strand, 21217403 - 21217295
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||||||  || |||||||||||  || |||| ||||||| ||||| || | || | ||||||||   |||| |||||||    
T  21217403 atgtttttagtccttacattttgcgccgctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatccccgttaacaaaatt 21217304  T
Q  646 agtctctgc 654  Q
    |||| ||||    
T  21217303 agtccctgc 21217295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 654
Target Start/End: Original strand, 21264999 - 21265107
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||||||  || |||||||||||  || |||| ||||||| ||||| || | || | ||||||||   |||| |||||||    
T  21264999 atgtttttagtccttacattttgcgccgctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatccccgttaacaaaatt 21265098  T
Q  646 agtctctgc 654  Q
    |||| ||||    
T  21265099 agtccctgc 21265107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 649
Target Start/End: Complemental strand, 24093627 - 24093535
Alignment:
Q  557 ccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtc 649  Q
    ||||| ||||||| ||| || ||||||||||   || |||||||||||| ||||| || | |||| |||||||||  ||||||||||||||||    
T  24093627 ccttacattttgcacccatttgaagaatagtgcctatattttattaaatgtttttaaaatccttacattttatctccgttatcaaaattagtc 24093535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 24093164 - 24093267
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| | ||||||||| || |||||||||||  || |||| ||||||| ||||| || | || | || || |||| |||||||||||     
T  24093164 atgtttttagtccttacactttgcgcccctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacatcttctcttcgttatcaaaatc 24093263  T
Q  646 agtc 649  Q
    ||||    
T  24093264 agtc 24093267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 647
Target Start/End: Original strand, 32860822 - 32860923
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||| | |||||||||||| || || ||| ||||||| ||| |||| ||||||| ||||| || | || | |||||||||  || |||||||||    
T  32860822 atgtttttagcctttatattttgcgtccctttgaaaaatagtcgttatatttcattaaatgtttttaaaatcctaacattttatctccgtgatcaaaatt 32860921  T
Q  646 ag 647  Q
    ||    
T  32860922 ag 32860923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 649
Target Start/End: Original strand, 21216934 - 21217034
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    ||||||||||||| ||||||||||  || |||||||||||  || |||| ||||||| ||||| || | || | |||||||||    |||||||||||||    
T  21216934 tttttagtccttacattttgcgcctctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatctccactatcaaaattagt 21217033  T
Q  649 c 649  Q
    |    
T  21217034 c 21217034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 649
Target Start/End: Complemental strand, 21265468 - 21265368
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    ||||||||||||| ||||||||||  || |||||||||||  || |||| ||||||| ||||| || | || | |||||||||    |||||||||||||    
T  21265468 tttttagtccttacattttgcgcctctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatctccactatcaaaattagt 21265369  T
Q  649 c 649  Q
    |    
T  21265368 c 21265368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 14713088 - 14712979
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||| | |||| ||||||||| |||| ||||||||||| ||| |||| ||||||| |||| ||| | || ||||||||||| |||||||||||||    
T  14713088 atgtttttaattcttacattttgcgctcttttgaagaatagtccttacatttcattaaatgttttagaaatgctcatattttatctctgttatcaaaatt 14712989  T
Q  646 agtctctgct 655  Q
    ||||||||||    
T  14712988 agtctctgct 14712979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 551 - 655
Target Start/End: Original strand, 21113042 - 21113146
Alignment:
Q  551 tttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtct 650  Q
    ||||||||||| |||||||||||| | |||||||||||| || |||| ||||||| ||||| || |||| | |||||||||   ||||||||||||||||    
T  21113042 tttagtccttacattttgcgccctattgaagaatagtctctacatttcattaaatgtttttaaaattctcacattttatctcctttatcaaaattagtct 21113141  T
Q  651 ctgct 655  Q
    |||||    
T  21113142 ctgct 21113146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 7646064 - 7645955
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| |||||| || | || ||||||||||| ||| |||| | ||||| ||||  || |||| | |||||||||  ||||||||||||    
T  7646064 atgtttttagtccttacattttgtgctcctttgaagaatagtccttacatttcaataaatgttttaaaaattctcacattttatctccgttatcaaaatt 7645965  T
Q  646 agtctctgct 655  Q
    |||| |||||    
T  7645964 agtccctgct 7645955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 546 - 611
Target Start/End: Complemental strand, 8710422 - 8710357
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatattttt 611  Q
    |||||||||||||||||||||||| ||| || ||||||||||| ||| |||| ||||||| |||||    
T  8710422 atgtttttagtccttatattttgcacccctttgaagaatagtccttacatttcattaaatgttttt 8710357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 611
Target Start/End: Original strand, 5974019 - 5974084
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatattttt 611  Q
    |||||||||||||||||||||||| ||| || |||||||||||  || |||| ||||||| |||||    
T  5974019 atgtttttagtccttatattttgcacccctttgaagaatagtccctacatttcattaaatgttttt 5974084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 655
Target Start/End: Original strand, 17157554 - 17157663
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||||| |||| ||||| ||||   | |||||||||||  || |||| ||||||||||||| || | || | ||||||||| | |||||||||||    
T  17157554 atgtttttagttcttacattttacgcctcattgaagaatagtccatacatttcattaaatatttttaaaatcctcacattttatctctattatcaaaatt 17157653  T
Q  646 agtctctgct 655  Q
    |||| |||||    
T  17157654 agtcactgct 17157663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 605
Target Start/End: Original strand, 211449 - 211508
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaat 605  Q
    |||||||||||||||| ||||||||||| || |||||||||||  || |||| |||||||    
T  211449 atgtttttagtccttacattttgcgcccctttgaagaatagtccgtacatttcattaaat 211508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 647
Target Start/End: Original strand, 4510196 - 4510298
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttct-tatattttatctttgttatcaaaat 644  Q
    |||||||||||||||| ||||| ||||  || |||||||||||  || |||| ||||||| ||||| || | ||  |||||||||||  |||||||||||    
T  4510196 atgtttttagtccttacattttacgcctatttgaagaatagtccctacatttcattaaatgtttttaaaatcctccatattttatctcggttatcaaaat 4510295  T
Q  645 tag 647  Q
    |||    
T  4510296 tag 4510298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 611
Target Start/End: Complemental strand, 211803 - 211738
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatattttt 611  Q
    ||||||||| |||||| ||||||||||  || |||||||||||  || |||| |||||||||||||    
T  211803 atgtttttaatccttacattttgcgcctatttgaagaatagtccctacatttcattaaatattttt 211738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 607
Target Start/End: Complemental strand, 17157915 - 17157854
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatat 607  Q
    |||||||||||||||| ||||||||||  || |||||||||||  || |||| |||||||||    
T  17157915 atgtttttagtccttacattttgcgccactttgaagaatagtccctacatttcattaaatat 17157854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 16284282 - 16284385
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||||   ||| ||||||||||||||| |||||||||||| ||||| || | || |||||||||||  ||||||||||||    
T  16284282 atgtttttagtccttacattttgcgtttttttgaagaatagtctttatattttattaaatgtttttaaaatcctcatattttatctccgttatcaaaatt 16284381  T
Q  646 agtc 649  Q
    ||||    
T  16284382 agtc 16284385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 550 - 650
Target Start/End: Complemental strand, 8648143 - 8648043
Alignment:
Q  550 ttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtc 649  Q
    |||||||||||| |||||||| ||||| ||||||||||||||| |||| ||||||||||||| || | || | ||||| |||  ||||||||||||||||    
T  8648143 ttttagtccttacattttgcgtcctttggaagaatagtctttacatttcattaaatatttttaaaatcctcacattttttctccgttatcaaaattagtc 8648044  T
Q  650 t 650  Q
    |    
T  8648043 t 8648043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 546 - 646
Target Start/End: Complemental strand, 18999722 - 18999622
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| |||||||  | ||| |||||||||||  || |||| ||||||||||||| || | || | |||||||||||||||||||||||    
T  18999722 atgtttttagtccttacattttgcttcattttgaagaatagtccatacatttcattaaatatttttaaaatcctcacattttatctttgttatcaaaatt 18999623  T
Q  646 a 646  Q
    |    
T  18999622 a 18999622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 649
Target Start/End: Complemental strand, 3406941 - 3406839
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||  |||||||||||||| ||| ||||||||||    | |||||||||||||||||| || |||| | ||||||||| |||||||||||||    
T  3406941 atgtttttagtt-ttatattttgcgcctttttgaagaatagttccaatattttattaaatatttttaaaattctcacattttatctctgttatcaaaatt 3406843  T
Q  646 agtc 649  Q
    ||||    
T  3406842 agtc 3406839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 546 - 644
Target Start/End: Original strand, 1650013 - 1650110
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaat 644  Q
    |||||||||||  |||||||||||||| ||| |||||||| | | || |||||||||||| ||||| || ||||||||||||||||  |||||||||||    
T  1650013 atgtttttagtatttatattttgcgccattt-gaagaatattatctacattttattaaatgtttttaaaattcttatattttatctccgttatcaaaat 1650110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 31588429 - 31588319
Alignment:
Q  546 atgtttttagtccttatattttgcg-ccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaat 644  Q
    |||||||||||||||| |||||||| ||| || |||||||||||  || |||| ||||||||||||| || | || | |||||||||  |||||||||||    
T  31588429 atgtttttagtccttacattttgcgtcccctttgaagaatagtccctacatttcattaaatatttttaaaatcctaacattttatctccgttatcaaaat 31588330  T
Q  645 tagtctctgct 655  Q
    ||||| |||||    
T  31588329 tagtccctgct 31588319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 546 - 650
Target Start/End: Complemental strand, 87343 - 87239
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||||||||||||||||| | || || |||||||||||  || |||| ||||||| ||||| || | || | |||||||||  ||||||||||||    
T  87343 atgtttttagtccttatattttgtgtccctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatt 87244  T
Q  646 agtct 650  Q
    |||||    
T  87243 agtct 87239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 18999374 - 18999477
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||| | |||| |||||||||||  || |||| ||||||||||||| || | ||   |||||||||  ||||||||||||    
T  18999374 atgtttttagtccttacattttgcactcttttgaagaatagtccatacatttcattaaatatttttaaaatcctctcattttatctccgttatcaaaatt 18999473  T
Q  646 agtc 649  Q
    ||||    
T  18999474 agtc 18999477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 546 - 655
Target Start/End: Original strand, 13987290 - 13987400
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaat-atttttgaagttcttatattttatctttgttatcaaaat 644  Q
    ||||||||||| |||| |||| ||||||||| |||||||| ||| || |||| |||||||  ||||| || |||| | |||||||||  ||||| |||||    
T  13987290 atgtttttagttcttacatttcgcgcccttttgaagaataatctctatatttcattaaatgttttttaaaattctcacattttatctccgttattaaaat 13987389  T
Q  645 tagtctctgct 655  Q
    |||||||||||    
T  13987390 tagtctctgct 13987400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 614
Target Start/End: Complemental strand, 22231242 - 22231174
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaa 614  Q
    |||||||||||||||||||||||||||| ||  ||||||||||  || |||| ||||||| ||||||||    
T  22231242 atgtttttagtccttatattttgcgcccctttaaagaatagtccctatatttcattaaatgtttttgaa 22231174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 649
Target Start/End: Complemental strand, 8750442 - 8750339
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||||    || |||||||||||  || |||||||||||| | ||| || | || |||||||||||  ||||||||||||    
T  8750442 atgtttttagtccttacattttgcgtttctttgaagaatagtccctacattttattaaatgtgtttaaaatcctcatattttatctccgttatcaaaatt 8750343  T
Q  646 agtc 649  Q
    ||||    
T  8750342 agtc 8750339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 31176515 - 31176618
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||||||||||||||||||| || || |||||| ||||  || |||| ||||||| ||||| || |  | ||||||||||   ||||||||||||    
T  31176515 atgtttttagtccttatattttgcgtccctttgaagaacagtccatacatttcattaaatgtttttaaaatcgtcatattttatccccgttatcaaaatt 31176614  T
Q  646 agtc 649  Q
    ||||    
T  31176615 agtc 31176618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 646
Target Start/End: Original strand, 3406469 - 3406567
Alignment:
Q  548 gtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatta 646  Q
    ||||||| |||||| || ||||| |  | |||||||||||   || |||| ||||||| ||||| || | |||||||||||||| ||||||||||||||    
T  3406469 gtttttaatccttaaatattgcgtctctacgaagaatagttcatatatttcattaaatgtttttaaaatccttatattttatctctgttatcaaaatta 3406567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 655
Target Start/End: Complemental strand, 3935773 - 3935667
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    ||||||||||||  ||||| ||| | || |||||||| ||  || |||| ||||| | ||||| || | || | |||||||||||||||| |||||||||    
T  3935773 tttttagtcctttcattttacgctcctttgaagaataatccctacatttcattaattgtttttaaaatcctcacattttatctttgttattaaaattagt 3935674  T
Q  649 ctctgct 655  Q
    |||||||    
T  3935673 ctctgct 3935667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 649
Target Start/End: Original strand, 18339090 - 18339184
Alignment:
Q  555 gtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtc 649  Q
    ||||||| ||||||||||| || |||||||||||| || |||| ||||||| ||||| || | || | |||||||||   | |||||||||||||    
T  18339090 gtccttacattttgcgcccctttgaagaatagtctctatatttcattaaatgtttttaaaatcctcacattttatctccatcatcaaaattagtc 18339184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 546 - 652
Target Start/End: Complemental strand, 22948960 - 22948854
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| |||||||| || || |||||||||||| || |||| ||||||| ||||| || | || | |||||||||  ||||||||||||    
T  22948960 atgtttttagtccttacattttgcgaccctttgaagaatagtctctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatt 22948861  T
Q  646 agtctct 652  Q
    |||||||    
T  22948860 agtctct 22948854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 649
Target Start/End: Complemental strand, 20544392 - 20544290
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||||||||||| || ||| ||||||||||| ||| |||| ||||||| ||||| ||  ||| | |||||||||| |||||||||||     
T  20544392 atgtttttagtccttatattttgcacctttttgaagaatagtccttacatttcattaaatgttttt-aaaatctcacattttatcttcgttatcaaaatc 20544294  T
Q  646 agtc 649  Q
    ||||    
T  20544293 agtc 20544290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 550 - 650
Target Start/End: Original strand, 11974676 - 11974776
Alignment:
Q  550 ttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtc 649  Q
    |||||||||||| ||||||||| | || ||| |||||||| || |||| ||||||| ||||| || | || | |||||||||| ||||||||||||||||    
T  11974676 ttttagtccttacattttgcgctcctttgaaaaatagtctgtacatttcattaaatgtttttaaaatcctcacattttatcttcgttatcaaaattagtc 11974775  T
Q  650 t 650  Q
    |    
T  11974776 t 11974776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 593 - 653
Target Start/End: Original strand, 44803381 - 44803441
Alignment:
Q  593 aattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtctctg 653  Q
    ||||||||||||||||||| || | |||||||||||||| || ||||||||||||||||||    
T  44803381 aattttattaaatatttttaaaatccttatattttatctctgctatcaaaattagtctctg 44803441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 649
Target Start/End: Complemental strand, 44803714 - 44803611
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| |||||||||   ||  ||||||||||| || |||| ||||||| ||||| || |||| | |||||||||  ||||||||||||    
T  44803714 atgtttttagtccttacattttgcgcttctttaaagaatagtctctacatttcattaaatgtttttaaaattctcacattttatctccgttatcaaaatt 44803615  T
Q  646 agtc 649  Q
    ||||    
T  44803614 agtc 44803611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 546 - 655
Target Start/End: Original strand, 20543919 - 20544028
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||| | |||| |||||| |||| || |||||||||||  || |||| ||||||| ||||| || | || |||||||||||  ||||||||||||    
T  20543919 atgtttttaattcttacattttgtgcccctttgaagaatagtccctacatttcattaaatttttttaaaatcctcatattttatctccgttatcaaaatt 20544018  T
Q  646 agtctctgct 655  Q
    ||| ||||||    
T  20544019 agtttctgct 20544028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 649
Target Start/End: Complemental strand, 23549086 - 23548986
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    |||||| | |||| |||||||||||||| |||||||| ||| || |||| ||||||| |||||||| | || | ||||||| |  |||||||||||||||    
T  23549086 tttttatttcttacattttgcgcccttttgaagaatactctctatatttcattaaatctttttgaaatcctcaaattttatttccgttatcaaaattagt 23548987  T
Q  649 c 649  Q
    |    
T  23548986 c 23548986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 650
Target Start/End: Original strand, 32092236 - 32092340
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||||||  || |||||||||||  |  |||| ||||||| ||||| || | || | ||||| | |||||||||||||||    
T  32092236 atgtttttagtccttacattttgcgcctctttgaagaatagtccctgcatttcattaaatgtttttaaaatcctcacattttgtgtttgttatcaaaatt 32092335  T
Q  646 agtct 650  Q
    |||||    
T  32092336 agtct 32092340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 611
Target Start/End: Complemental strand, 30939646 - 30939581
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatattttt 611  Q
    ||||||||||||| || ||||| |||| |||||||||||||||  || |||| |||||||||||||    
T  30939646 atgtttttagtccctacattttacgccatttcgaagaatagtccctacatttcattaaatattttt 30939581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 646
Target Start/End: Original strand, 28854685 - 28854785
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||| |||||||||||||||||| ||  ||||||| ||  || |||||||||||| ||||| || | || | ||||||| |  ||||||||||||    
T  28854685 atgtttttaatccttatattttgcgcccatttaaagaatactccctacattttattaaatgtttttaaaatcctcacattttatttcagttatcaaaatt 28854784  T
Q  646 a 646  Q
    |    
T  28854785 a 28854785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 17075227 - 17075330
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||||||||||||||  || |||||||||||  || |||| ||||||  ||||| || | || | ||||||||   |||| |||||||    
T  17075227 atgtttttagtccttatattttgcgccgctttgaagaatagtccctacatttcattaaaagtttttaaaatcctcacattttatccccgttaacaaaatt 17075326  T
Q  646 agtc 649  Q
    ||||    
T  17075327 agtc 17075330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 611
Target Start/End: Complemental strand, 16755714 - 16755650
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatattttt 611  Q
    ||||||||| |||| ||||||||||||  || |||||||||||| || |||| |||||||||||||    
T  16755714 atgtttttaatcct-atattttgcgccactttgaagaatagtctctatatttcattaaatattttt 16755650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 647
Target Start/End: Original strand, 18152764 - 18152865
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||| ||| |||| ||||||||||| || |||||||||||  || ||||| |||||| || || || | || | |||||||||  ||||||||||||    
T  18152764 atgttttcagttcttacattttgcgcccctttgaagaatagtccctacattttgttaaatgttcttaaaatcctcacattttatctccgttatcaaaatt 18152863  T
Q  646 ag 647  Q
    ||    
T  18152864 ag 18152865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 649
Target Start/End: Complemental strand, 17075696 - 17075596
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    ||||||||||||| ||||||||||  || |||||||||||  || |||| ||||||| ||||| || | || | |||||||||    |||||||||||||    
T  17075696 tttttagtccttacattttgcgcctctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatctccactatcaaaattagt 17075597  T
Q  649 c 649  Q
    |    
T  17075596 c 17075596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 649
Target Start/End: Complemental strand, 42750205 - 42750097
Alignment:
Q  541 gttaaatgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatca 640  Q
    ||||||| ||||||||| ||| ||||| ||||| || |||||||||||  || |||| ||||||  ||||| || | || | |||||||||  ||||| |    
T  42750205 gttaaatatttttagtctttacattttacgcccctttgaagaatagtccctacatttcattaaacgtttttaaaatcctcacattttatctccgttatta 42750106  T
Q  641 aaattagtc 649  Q
    |||||||||    
T  42750105 aaattagtc 42750097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 9880872 - 9880763
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||| | |||| ||||||||| | || |||||||||| | || |||||||||||| ||||| || |||| | ||||||||| |||||||||||||    
T  9880872 atgtttttaattcttacattttgcgctcatttgaagaatagtttctatattttattaaatgtttttaaaattctcacattttatctctgttatcaaaatt 9880773  T
Q  646 agtctctgct 655  Q
    |||| |||||    
T  9880772 agtccctgct 9880763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 550 - 655
Target Start/End: Complemental strand, 31436461 - 31436356
Alignment:
Q  550 ttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtc 649  Q
    |||||||||||| |||||| | ||||| |||||||||||  || |||||||||||| ||||| || || | | |||||||||  ||||||||||||||||    
T  31436461 ttttagtccttacattttgtgtccttttgaagaatagtcactatattttattaaatgtttttaaaattatcacattttatctccgttatcaaaattagtc 31436362  T
Q  650 tctgct 655  Q
    ||||||    
T  31436361 tctgct 31436356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 50359521 - 50359412
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||| || |||||| ||||||||||| || ||||||||||| ||  |||| ||||||| ||||| || | || | ||||||||| |||||||||||||    
T  50359521 atgtttatattccttacattttgcgcccatttgaagaatagtccttttatttcattaaatgtttttaaaatcctcacattttatctctgttatcaaaatt 50359422  T
Q  646 agtctctgct 655  Q
    ||||||||||    
T  50359421 agtctctgct 50359412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 578 - 650
Target Start/End: Complemental strand, 19895850 - 19895778
Alignment:
Q  578 gaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtct 650  Q
    |||||||||||| || |||||||||||| ||||| || |||| |||||||||||| |||||||||||||||||    
T  19895850 gaagaatagtctctacattttattaaatgtttttaaaattctcatattttatcttcgttatcaaaattagtct 19895778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 649
Target Start/End: Complemental strand, 18180360 - 18180257
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||| || ||||||||||||||  || |||||||||||  || |||||||||||| ||||| || | || |||||||||||  ||||||||||||    
T  18180360 atgtttttaatctttatattttgcgccactttgaagaatagtccatacattttattaaatgtttttaaaatcctcatattttatctccgttatcaaaatt 18180261  T
Q  646 agtc 649  Q
    ||||    
T  18180260 agtc 18180257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 5683643 - 5683534
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||||||||| || | ||| |||||||||||  || |||| ||||||||||||| || | ||  ||||||||||  | ||||||||||    
T  5683643 atgtttttagtccttatattttacgtctttttgaagaatagtccctacatttcattaaatatttttaaaatcctcgtattttatctccggtatcaaaatt 5683544  T
Q  646 agtctctgct 655  Q
    |||| |||||    
T  5683543 agtcactgct 5683534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 546 - 656
Target Start/End: Original strand, 48154982 - 48155091
Alignment:
Q  546 atgtttttagtccttatattttgcgcc-ctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaat 644  Q
    ||||||||| |||||||||||| |||| ||||  |||||||||| ||| |||||||||||| ||||| || | || |||||||||||  | |||||||||    
T  48154982 atgtttttaatccttatattttacgccgcttt--aagaatagtccttacattttattaaatgtttttaaaatcctcatattttatctccgatatcaaaat 48155079  T
Q  645 tagtctctgctc 656  Q
    || |||||||||    
T  48155080 taatctctgctc 48155091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 5172753 - 5172856
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||||| |||| ||||||||| | || |||||||||||| || |||| ||||||| ||||| || | |||| |||||||||  ||||||||| ||    
T  5172753 atgtttttagttcttacattttgcgctcatttgaagaatagtctctacatttcattaaatgtttttaaaatccttacattttatctacgttatcaaattt 5172852  T
Q  646 agtc 649  Q
    ||||    
T  5172853 agtc 5172856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 9880492 - 9880595
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| |||||||  || || |||||| ||||| || |||| ||||||| ||||| || | || | |||||||||| ||||||||||||    
T  9880492 atgtttttagtccttacattttgcatccctttgaagaaaagtctctacatttcattaaatgtttttaaaatcctcacattttatcttcgttatcaaaatt 9880591  T
Q  646 agtc 649  Q
    ||||    
T  9880592 agtc 9880595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 6751436 - 6751326
Alignment:
Q  546 atgtttttagtccttatattttg-cgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaat 644  Q
    |||||||||||| ||| |||||| || || ||  ||||| |||| ||| |||| ||||||| ||||| || | || | ||||||||||||||||||||||    
T  6751436 atgtttttagtcattacattttggcgtccctttaaagaaaagtccttacatttcattaaatttttttaaaatcctcacattttatctttgttatcaaaat 6751337  T
Q  645 tagtctctgct 655  Q
    |||||||||||    
T  6751336 tagtctctgct 6751326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 546 - 652
Target Start/End: Original strand, 18179887 - 18179993
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| ||||||| ||| || ||| ||||||| ||| |||| ||||| | ||||| || | || | |||||||||  ||||||||||||    
T  18179887 atgtttttagtccttacattttgcacccctttgaaaaatagtccttatatttcattaattgtttttaaaatcctcacattttatctccgttatcaaaatt 18179986  T
Q  646 agtctct 652  Q
    |||||||    
T  18179987 agtctct 18179993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 549 - 655
Target Start/End: Complemental strand, 3591416 - 3591310
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    ||||||||||||| ||||||||| | || |||||||||||  || |||||||||||| ||||| || | || | |||||||||   |||| |||||||||    
T  3591416 tttttagtccttacattttgcgctcatttgaagaatagtccatacattttattaaatgtttttaaaatcctcacattttatctccattataaaaattagt 3591317  T
Q  649 ctctgct 655  Q
    | |||||    
T  3591316 ccctgct 3591310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 588
Target Start/End: Complemental strand, 4288517 - 4288475
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtc 588  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  4288517 atgtttttagtccttatattttgcgcccctttgaagaatagtc 4288475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 549 - 611
Target Start/End: Original strand, 50359136 - 50359198
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatattttt 611  Q
    ||||||||||||||||||||||||  ||||||||||||||  || |||| ||||||| |||||    
T  50359136 tttttagtccttatattttgcgccaattcgaagaatagtccctacatttcattaaatgttttt 50359198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 611
Target Start/End: Complemental strand, 1501063 - 1500998
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatattttt 611  Q
    ||||||||||||| |||||||||||| |||| |||||||||||  || |||| ||||||| |||||    
T  1501063 atgtttttagtccctatattttgcgctcttttgaagaatagtccctacatttcattaaatgttttt 1500998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 611
Target Start/End: Original strand, 37927528 - 37927593
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatattttt 611  Q
    |||||||||||| ||||||||| ||| || | |||||||||||| || |||| |||||||||||||    
T  37927528 atgtttttagtctttatattttacgctctattgaagaatagtctctacatttgattaaatattttt 37927593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 649
Target Start/End: Complemental strand, 48155361 - 48155258
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||| |||||||||||||||| | || ||||||| ||   || |||| ||||||| ||||| || |  | | ||||||||| |||||||||||||    
T  48155361 atgtttttaatccttatattttgcgctcctttgaagaattgttcctatatttcattaaatgtttttaaaatcttcacattttatctatgttatcaaaatt 48155262  T
Q  646 agtc 649  Q
    ||||    
T  48155261 agtc 48155258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 650
Target Start/End: Original strand, 19895408 - 19895512
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| |||||  || | || |||||||||||  || |||| ||||||| ||||| ||   || | |||||||||  ||||||||||||    
T  19895408 atgtttttagtccttacattttatgctcgtttgaagaatagtccatacatttaattaaatgtttttaaaaccctcacattttatctccgttatcaaaatt 19895507  T
Q  646 agtct 650  Q
    |||||    
T  19895508 agtct 19895512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 549 - 649
Target Start/End: Original strand, 43933451 - 43933551
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    ||||||||||||| |||||| |||| || |||||||||||  || |||| ||||||||||||| || | || | |||||||||| |||||||||||||||    
T  43933451 tttttagtccttacattttgtgcccgtttgaagaatagtccctacatttcattaaatatttttaaaatcctcacattttatcttcgttatcaaaattagt 43933550  T
Q  649 c 649  Q
    |    
T  43933551 c 43933551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 649
Target Start/End: Complemental strand, 13637862 - 13637759
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||| ||||||||| ||||||||||| || |||||||||||| || |||| ||||||||||||| || | || | |||||||||  |||||||||| |    
T  13637862 atgtttctagtccttacattttgcgcccctttgaagaatagtctctacatttcattaaatatttttaaaatcctcacattttatctccgttatcaaaact 13637763  T
Q  646 agtc 649  Q
    ||||    
T  13637762 agtc 13637759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 546 - 655
Target Start/End: Original strand, 22814304 - 22814413
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||| | |||| ||||||||||| || |||||||||||  || |||| ||||||| ||||| || | || | |||||||||| ||||||||||||    
T  22814304 atgtttttaattcttacattttgcgcccctttgaagaatagtccatacatttcattaaatgtttttaaaatcctcacattttatcttcgttatcaaaatt 22814403  T
Q  646 agtctctgct 655  Q
    |||| |||||    
T  22814404 agtccctgct 22814413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 547 - 646
Target Start/End: Complemental strand, 44504467 - 44504368
Alignment:
Q  547 tgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatta 646  Q
    ||||||||||||||| ||||||| ||| || ||||||||||| ||| |||| ||||||| ||||| || | || | |||||||||  |||||||||||||    
T  44504467 tgtttttagtccttacattttgcacccctttgaagaatagtccttacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatta 44504368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 653
Target Start/End: Original strand, 51471343 - 51471450
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||| ||||| |||| |||||||| || || |||||||||| | || |||| ||||||| ||||| || | || | |||||||||  ||||||||||||    
T  51471343 atgttcttagttcttacattttgcgtccctttgaagaatagtttctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatt 51471442  T
Q  646 agtctctg 653  Q
    ||||||||    
T  51471443 agtctctg 51471450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 648
Target Start/End: Complemental strand, 43933809 - 43933708
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||| | |||||||| || || ||| |||||||| ||  ||| ||||||| ||||| || | || ||||||||||| |||||||||||||    
T  43933809 atgtttttagtcctcacattttgcgtccatttgaaaaatagtctctac-tttcattaaatgtttttaaaatcctcatattttatctctgttatcaaaatt 43933711  T
Q  646 agt 648  Q
    |||    
T  43933710 agt 43933708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 649
Target Start/End: Original strand, 44504098 - 44504203
Alignment:
Q  544 aaatgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaa 643  Q
    |||||| |||||| |||| |||||| | || || |||||||||||  || |||| ||||||||||||| || | || | |||||||||  ||||||||||    
T  44504098 aaatgtctttagttcttacattttgtgtccatttgaagaatagtccctacatttcattaaatatttttaaaatcctcacattttatctccgttatcaaaa 44504197  T
Q  644 ttagtc 649  Q
    ||||||    
T  44504198 ttagtc 44504203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 650
Target Start/End: Complemental strand, 25770798 - 25770694
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||| |||||| ||||||| | | || ||||||||||   || |||||||||||| ||||| || |  |||||||||||||  ||||| ||||||    
T  25770798 atgtttttaatccttacattttgcactcatttgaagaatagttcctacattttattaaatgtttttaaaatatttatattttatctccgttataaaaatt 25770699  T
Q  646 agtct 650  Q
    |||||    
T  25770698 agtct 25770694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 653
Target Start/End: Complemental strand, 9218595 - 9218489
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||| ||| ||||||||| | || |||||||||||  || |||| ||||||| ||||| || |  | | |||||||||| |||||| |||||    
T  9218595 atgtttttagtcattacattttgcgctcctttgaagaatagtccctatatttcattaaatgtttttaaaatcatcacattttatcttcgttatc-aaatt 9218497  T
Q  646 agtctctg 653  Q
    ||||||||    
T  9218496 agtctctg 9218489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 655
Target Start/End: Original strand, 50732233 - 50732342
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||  |||||| ||||||||| | || ||| |||||||  || |||| ||||||||||||| || | ||   |||||||||  ||||||||||||    
T  50732233 atgttttttatccttacattttgcgctcctttgaaaaatagtccatacatttcattaaatatttttaaaatcctcgcattttatctccgttatcaaaatt 50732332  T
Q  646 agtctctgct 655  Q
    |||| |||||    
T  50732333 agtccctgct 50732342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 50780622 - 50780513
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||  |||||| ||||||||| | || ||| |||||||  || |||| ||||||||||||| || | ||   |||||||||  ||||||||||||    
T  50780622 atgttttttatccttacattttgcgctcctttgaaaaatagtccatacatttcattaaatatttttaaaatcctcgcattttatctccgttatcaaaatt 50780523  T
Q  646 agtctctgct 655  Q
    |||| |||||    
T  50780522 agtccctgct 50780513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 650
Target Start/End: Original strand, 13637531 - 13637587
Alignment:
Q  594 attttattaaatatttttgaagttcttatattttatctttgttatcaaaattagtct 650  Q
    |||| ||||||||||||| || |  | |||||||||||| |||||||||||||||||    
T  13637531 atttcattaaatatttttaaaatcttcatattttatcttcgttatcaaaattagtct 13637587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 649
Target Start/End: Original strand, 37172092 - 37172192
Alignment:
Q  549 tttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaattagt 648  Q
    ||||||||||||| |||||||||   ||  ||||||||||| || |||| ||||||| ||||| || | || | | |||||||  |||||||||||||||    
T  37172092 tttttagtccttacattttgcgcttatttaaagaatagtctctacatttcattaaatgtttttaaaatcctcacagtttatctccgttatcaaaattagt 37172191  T
Q  649 c 649  Q
    |    
T  37172192 c 37172192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 610
Target Start/End: Complemental strand, 45728399 - 45728335
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttt 610  Q
    |||||||||||||||| |||||| | || || |||||||||||  || |||| ||||||||||||    
T  45728399 atgtttttagtccttacattttgtgtccctttgaagaatagtccatacatttcattaaatatttt 45728335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 546 - 655
Target Start/End: Original strand, 34800 - 34909
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    ||||||||||||||||||||||||| |  || ||| ||| |||  || |||| ||||||| ||||| |||| || | |||||||||  ||||||||||||    
T  34800 atgtttttagtccttatattttgcgtctatttgaataatggtccatacatttcattaaatgtttttaaagtactcacattttatctccgttatcaaaatt 34899  T
Q  646 agtctctgct 655  Q
    ||||||||||    
T  34900 agtctctgct 34909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 546 - 648
Target Start/End: Complemental strand, 35274 - 35172
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| |||||||| || || |||||||||||| || |||||||| ||| ||||| || | || | |||||||||  ||||| ||||||    
T  35274 atgtttttagtccttacattttgcgtccctttgaagaatagtctctacattttattgaatgtttttaaaatcctcacattttatctcggttatgaaaatt 35175  T
Q  646 agt 648  Q
    |||    
T  35174 agt 35172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 108204 - 108095
Alignment:
Q  546 atgtttttagtccttatattttgcgccctttcgaagaatagtctttaaattttattaaatatttttgaagttcttatattttatctttgttatcaaaatt 645  Q
    |||||||||||||||| |||||||||||||| |||||||  |   || |||| ||||||| ||||| || | || | |||||||||  ||||||||||||    
T  108204 atgtttttagtccttacattttgcgcccttttgaagaattattcctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatt 108105  T
Q  646 agtctctgct 655  Q
    ||||||||||    
T  108104 agtctctgct 108095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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