View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11195_low_22 (Length: 210)
Name: NF11195_low_22
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11195_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 44860418 - 44860237
Alignment:
| Q |
10 |
aggagcagagaaaggcatgccaagagatgtactgtgttcacattaatattctcacctttgaagttgaatgcttgtaaaactggaatgaagtgacaaattc |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44860418 |
aggaacagagaaaggcatgccaagagatgtactgtgttcacattattattctcacctttgaagttgaatgcttgtaaaactggaatgaagtgacaaattc |
44860319 |
T |
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| Q |
110 |
agccacttgaaagnnnnnnncgacgtcagctttttgaactgcaggatgttccttttcaatatcttcacggacggatcgcatc |
191 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44860318 |
agccacttgaaagaaaaaaacgacgtcagttttttgaactgcaggatgttccttttcaatatcttcacggacggatcgcatc |
44860237 |
T |
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